View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8120_low_12 (Length: 237)
Name: NF8120_low_12
Description: NF8120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8120_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29564320 - 29564098
Alignment:
| Q |
1 |
aaaacaaaaaccagacaagtctttttcaaattcccatgaagaggcagtgctcgacgttgggaaataaataacagtcacnnnnnnngcacagtgtctaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29564320 |
aaaacaaaaaccagacaagtctttttcaaattcccatgaagaggcagtgctcgacgttgggaaataaataacagtcacacaaaaagcacagtgtctaacg |
29564221 |
T |
|
| Q |
101 |
ttgttgttattattgtcatttcaaaatctctgttcttcctcttcacgaggttccacgcctagtacttagtaccgcttcttccatttattattactacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564220 |
ttgttgttattattgtcatttcaaaatctctgttcttcctcttcacgaggttgcacgcctagtacttagtaccgcttcttccatttattattactacata |
29564121 |
T |
|
| Q |
201 |
caccttccttcttataaacaaac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
29564120 |
caccttccttcttataaacaaac |
29564098 |
T |
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