View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8120_low_5 (Length: 286)

Name: NF8120_low_5
Description: NF8120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8120_low_5
NF8120_low_5
[»] chr1 (5 HSPs)
chr1 (15-275)||(20044876-20045137)
chr1 (150-205)||(20851127-20851182)
chr1 (150-205)||(20857754-20857809)
chr1 (150-205)||(21706281-21706336)
chr1 (150-205)||(21710823-21710878)
[»] scaffold2054 (1 HSPs)
scaffold2054 (15-199)||(583-769)
[»] scaffold0384 (1 HSPs)
scaffold0384 (142-275)||(15989-16122)
[»] chr6 (6 HSPs)
chr6 (15-205)||(11288663-11288855)
chr6 (182-275)||(14581076-14581169)
chr6 (150-205)||(15458495-15458550)
chr6 (150-205)||(15465090-15465145)
chr6 (157-281)||(25469625-25469747)
chr6 (79-205)||(31252357-31252483)
[»] scaffold0553 (1 HSPs)
scaffold0553 (169-275)||(11008-11114)
[»] chr7 (4 HSPs)
chr7 (15-205)||(14230650-14230841)
chr7 (15-205)||(14319624-14319815)
chr7 (79-205)||(31155327-31155454)
chr7 (150-205)||(20906456-20906511)
[»] chr3 (6 HSPs)
chr3 (150-276)||(24933753-24933878)
chr3 (150-205)||(10389438-10389493)
chr3 (150-205)||(10414527-10414582)
chr3 (150-205)||(10421197-10421252)
chr3 (150-205)||(12033439-12033494)
chr3 (150-205)||(17131737-17131792)
[»] scaffold0720 (1 HSPs)
scaffold0720 (15-205)||(3397-3588)
[»] chr2 (5 HSPs)
chr2 (15-205)||(27207714-27207905)
chr2 (20-205)||(23168293-23168483)
chr2 (20-205)||(23579550-23579740)
chr2 (150-205)||(25180924-25180979)
chr2 (150-204)||(10582-10636)
[»] scaffold0796 (2 HSPs)
scaffold0796 (157-275)||(1656-1775)
scaffold0796 (157-275)||(5679-5798)
[»] scaffold0453 (1 HSPs)
scaffold0453 (15-204)||(10546-10736)
[»] chr4 (2 HSPs)
chr4 (15-211)||(27906134-27906332)
chr4 (150-197)||(14486666-14486713)
[»] scaffold0609 (1 HSPs)
scaffold0609 (25-205)||(5852-6033)
[»] scaffold0261 (1 HSPs)
scaffold0261 (15-205)||(23564-23756)
[»] scaffold0249 (1 HSPs)
scaffold0249 (79-205)||(13889-14016)
[»] scaffold0348 (1 HSPs)
scaffold0348 (150-275)||(9341-9467)
[»] scaffold1318 (1 HSPs)
scaffold1318 (150-205)||(1907-1962)
[»] chr5 (4 HSPs)
chr5 (142-205)||(22461153-22461216)
chr5 (142-205)||(22467777-22467840)
chr5 (25-205)||(34829964-34830144)
chr5 (150-205)||(19236905-19236960)
[»] chr8 (1 HSPs)
chr8 (150-205)||(24320665-24320720)
[»] scaffold0034 (1 HSPs)
scaffold0034 (157-197)||(73297-73337)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 20045137 - 20044876
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccattttctttcaaaatcattctcataacctaatttctca 114  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||    
T  20045137 acatcatagattaagaaatcaaacagaatatcaaattacaatatattaaacatgattcttccattt-ctttcaaaatcagtctcataacctaatttctca 20045039  T
Q  115 atttatctccaaaa-ctattctttc-aagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaag 212  Q
    ||||| || ||||| ||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  20045038 atttaccttcaaaaactattttttttaagttaatttttcagaatttatatattaagatcattgaaggataatcccacccttaccttagaattgtaggaag 20044939  T
Q  213 atttaacacagcaaatcagctcctaagttttcccccttgttcttggtttctcttgctttctct 275  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20044938 aattaacacagcaaatcagctcctaagttttcccccttgttcttgttttctcttgctttctct 20044876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 20851182 - 20851127
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  20851182 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 20851127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 20857809 - 20857754
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  20857809 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 20857754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 21706281 - 21706336
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  21706281 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 21706336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 21710823 - 21710878
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  21710823 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 21710878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 583 - 769
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca-ttttctttcaaaatcattctcataacctaatttctc 113  Q
    |||| |||| ||||| ||||| |||||||| ||||| ||||  ||||||||||||| || ||| |||||||| ||||||| ||||||| |||||||||||    
T  583 acattatagattaagtaatcatacagaataccaaattacaacctattaaacatgattcttccacttttctttaaaaatcagtctcataccctaatttctc 682  T
Q  114 aatttatctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttacctta 199  Q
    ||||||| | ||| ||||||||||| | |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  683 aatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttacctta 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 16122 - 15989
Alignment:
Q  142 ttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaagtt 241  Q
    ||||||| |||||| | ||||||||  |  |||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  16122 ttaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 16023  T
Q  242 ttcccccttgttcttggtttctcttgctttctct 275  Q
    ||||||||||||||||||||||||||||||||||    
T  16022 ttcccccttgttcttggtttctcttgctttctct 15989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 11288855 - 11288663
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca-ttttctttcaaaatcattctcataacctaatttctc 113  Q
    |||| |||| ||||| ||||| |||||||| ||||| ||||  | ||||||||||| || ||| |||||||| ||||||| ||||||| |||||||||||    
T  11288855 acattatagattaagtaatcatacagaataccaaattacaaccttttaaacatgattcttccacttttcttttaaaatcagtctcataccctaatttctc 11288756  T
Q  114 aatttatctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    ||||||| | ||| ||||||||||| | |||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  11288755 aatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattg 11288663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 14581169 - 14581076
Alignment:
Q  182 aatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaagttttcccccttgttcttggtttctcttgctttctct 275  Q
    |||| ||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  14581169 aatctcacccttaccttagaattgcaggaagaattaacacagcaaaacagctcctaagttttcccccttgttattggtttctcttgctttctct 14581076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 15458495 - 15458550
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| ||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  15458495 tcagaaattatatattataatcattgaaagataatcccacccttaccttagaattg 15458550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 15465090 - 15465145
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| ||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  15465090 tcagaaattatatattataatcattgaaagataatcccacccttaccttagaattg 15465145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 25469747 - 25469625
Alignment:
Q  157 ttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaagttttcccccttgttctt 256  Q
    ||||| |||| ||| |||||  |||| || ||||||||||||| | ||| | ||||  |||||||||||| || ||||||||||||  ||||||||||||    
T  25469747 ttatagattatgattattgagagatagtctcacccttaccttaga-ttgtaagaaggattaacacagcaa-tcggctcctaagttt--ccccttgttctt 25469652  T
Q  257 ggttt--ctcttgctttctctgcttct 281  Q
    |||||  ||||||||||||||| ||||    
T  25469651 ggtttttctcttgctttctctggttct 25469625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 31252357 - 31252483
Alignment:
Q  79 tttctttcaaaatcattctcataacctaatttctcaattt-atctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattga 176  Q
    |||||||||||||||  |||||| ||||||| |||||||| |||| ||| ||||||||  | |  ||||||| |||||| ||||||||||  |||||| |    
T  31252357 tttctttcaaaatcagcctcataccctaatt-ctcaattttatcttcaagaactattcaattagattaattt-tcagaaattatatattataatcattaa 31252454  T
Q  177 aggataatcccacccttaccttacaattg 205  Q
    | ||||||| ||||||||||||| |||||    
T  31252455 aagataatctcacccttaccttagaattg 31252483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 11114 - 11008
Alignment:
Q  169 atcattgaaggataatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaagttttcccccttgttcttggtttctcttgc 268  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11114 atcattgaaggataatcccacccttaccttagaattttaggaagaattaacacagcaaatcagctcctaagttttcccccttgttcttgttttctcttgc 11015  T
Q  269 tttctct 275  Q
    |||||||    
T  11014 tttctct 11008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 14230650 - 14230841
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca-ttttctttcaaaatcattctcataacctaatttctc 113  Q
    ||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| ||  ||  ||||||||||||||| ||||||| ||||| |||||    
T  14230650 acatcatagattaagaaatcatacagaatatcaaattacaacatattaaacatgattcttacacctttctttcaaaatcagtctcataccctaa-ttctc 14230748  T
Q  114 aa-tttatctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    || ||||||| ||| ||||||||||| |  ||||||| |||||| ||||| |||||  |||||||| ||||||||||||||||||||| |||||    
T  14230749 aattttatcttcaagaactattcttttagattaattt-tcagaaattatacattaaattcattgaaagataatcccacccttaccttagaattg 14230841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 14319815 - 14319624
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccat-tttctttcaaaatcattctcataacctaatttctc 113  Q
    ||||||||| ||||||||| | ||||||||||||||  ||| |||||||||||||| ||  ||  ||||||||||||||| ||||||| ||||||| |||    
T  14319815 acatcatagattaagaaattatacagaatatcaaattgcaacatattaaacatgattcttacacctttctttcaaaatcagtctcataccctaatt-ctc 14319717  T
Q  114 aattt-atctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    ||||| |||| ||| ||||||||||| |  ||||||| |||||| ||||| ||||| ||||||||| ||||||||||||||||||||| |||||    
T  14319716 aattttatcttcaagaactattcttttagattaattt-tcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattg 14319624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 31155327 - 31155454
Alignment:
Q  79 tttctttcaaaatcattctcataacctaatttctcaattta--tctccaaaactattctttcaagttaatttctcagaatttatatattaagatcattga 176  Q
    ||||||||||||||| ||||||| ||||||| ||||||||   |||  ||||||||||    |  ||||||| |||||| ||||||||||  ||||||||    
T  31155327 tttctttcaaaatcagtctcataccctaatt-ctcaattttattcttaaaaactattcaactagattaatttttcagaaattatatattataatcattga 31155425  T
Q  177 aggataatcccacccttaccttacaattg 205  Q
    | ||||||||||||||||||||| |||||    
T  31155426 aagataatcccacccttaccttagaattg 31155454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 20906511 - 20906456
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  20906511 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 20906456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 24933878 - 24933753
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaagttttccccct 249  Q
    |||||| ||||| |||| ||| |||||  |||| || ||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||| |||||    
T  24933878 tcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtaggaagaattaacaccgcaaatcagctcctaagtttt-cccct 24933780  T
Q  250 tgttcttggtttctcttgctttctctg 276  Q
    |||||||||||||||||||||||||||    
T  24933779 tgttcttggtttctcttgctttctctg 24933753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 10389493 - 10389438
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| ||||| ||||  ||||||||| ||||||||||||||||||||| |||||    
T  10389493 tcagaaattatacattataatcattgaaagataatcccacccttaccttagaattg 10389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 10414582 - 10414527
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| ||||| ||||  ||||||||| ||||||||||||||||||||| |||||    
T  10414582 tcagaaattatacattataatcattgaaagataatcccacccttaccttagaattg 10414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 10421252 - 10421197
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| ||||| ||||  ||||||||| ||||||||||||||||||||| |||||    
T  10421252 tcagaaattatacattataatcattgaaagataatcccacccttaccttagaattg 10421197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 12033494 - 12033439
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  12033494 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 12033439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 17131737 - 17131792
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  17131737 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 17131792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 3588 - 3397
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca-ttttctttcaaaatcattctcataacctaatttctc 113  Q
    ||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| ||  ||  ||||||||||||||| ||||||| ||||| |||||    
T  3588 acatcatagattaagaaatcatacagaatatcaaattacaacatattaaacatgattcttacacctttctttcaaaatcagtctcataccctaa-ttctc 3490  T
Q  114 aa-tttatctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    || ||||||| ||| ||||||||||| |  ||||||| |||||| |||||||||||  |||||||| ||||||  ||||||||||||| |||||    
T  3489 aattttatcttcaagaactattcttttagattaattt-tcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattg 3397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 27207905 - 27207714
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccat-tttctttcaaaatcattctcataacctaatttctc 113  Q
    ||||||||| ||||||||| | ||||||||||||||  ||| |||||||||||||| ||  ||  ||||||||||||||| ||||||| ||||||| |||    
T  27207905 acatcatagattaagaaattatacagaatatcaaattgcaacatattaaacatgattcttacacctttctttcaaaatcagtctcataccctaatt-ctc 27207807  T
Q  114 aattt-atctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    ||||| |||| ||| ||||||||||| |  ||||||| |||||| ||||| ||||| ||||||||| ||||||||||||||||||||| |||||    
T  27207806 aattttatcttcaagaactattcttttagattaattt-tcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattg 27207714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 23168483 - 23168293
Alignment:
Q  20 ataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca--ttttctttcaaaatcattctcataacctaatttctcaatt 117  Q
    |||| ||||||||||| || ||| ||||||| |||| | |||||||||||  ||  ||  ||||||||||||||||   ||||| ||||||| |||||||    
T  23168483 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaatt-ctcaatt 23168385  T
Q  118 t----atctccaaaactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |    |||| |||||||||||| | |  ||||||| |||||| ||||| |||| ||||| |||| ||||||||||||||||||||| |||||    
T  23168384 tttttatcttcaaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattg 23168293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 23579740 - 23579550
Alignment:
Q  20 ataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca--ttttctttcaaaatcattctcataacctaatttctcaatt 117  Q
    |||| ||||||||||| || ||| ||||||| |||| | |||||||||||  ||  ||  ||||||||||||||||   ||||| ||||||| |||||||    
T  23579740 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaatt-ctcaatt 23579642  T
Q  118 t----atctccaaaactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |    |||| |||||||||||| | |  ||||||| |||||| ||||| |||| ||||| |||| ||||||||||||||||||||| |||||    
T  23579641 tttttatcttcaaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattg 23579550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 25180979 - 25180924
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  25180979 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 25180924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 10582 - 10636
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaatt 204  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| ||||    
T  10582 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaatt 10636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 1775 - 1656
Alignment:
Q  157 ttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaag-ttttcccccttgttct 255  Q
    ||||| |||| ||| |||||  |||| || |||||||||||||   ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  1775 ttatagattatgattattgagagatagtctcacccttaccttagttttgtaggaagaattaacacagcaaatcagctcctaagtttttcccccttgttct 1676  T
Q  256 tggtttctcttgctttctct 275  Q
    ||||||||||||||||||||    
T  1675 tggtttctcttgctttctct 1656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 5798 - 5679
Alignment:
Q  157 ttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaagatttaacacagcaaatcagctcctaag-ttttcccccttgttct 255  Q
    ||||| |||| ||| |||||  |||| || |||||||||||||   ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5798 ttatagattatgattattgagagatagtctcacccttaccttagttttgtaggaagaattaacacagcaaatcagctcctaagtttttcccccttgttct 5699  T
Q  256 tggtttctcttgctttctct 275  Q
    ||||||||||||||||||||    
T  5698 tggtttctcttgctttctct 5679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 10736 - 10546
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccat-tttctttcaaaatcattctcataacctaatttctc 113  Q
    |||| |||| ||||||||||| |||||| ||||||| ||||   |||||||||||| ||  ||  |||||||||||||||  |||||| ||||||| |||    
T  10736 acattatagattaagaaatcatacagaacatcaaattacaactcattaaacatgattcttacacctttctttcaaaatcagcctcataccctaatt-ctc 10638  T
Q  114 aattt-atctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaatt 204  Q
    ||||| |||| ||| ||||||||| | |  ||||||| |||||| ||||| ||||||||||||||| ||||||||||| ||||||||| ||||    
T  10637 aattttatcttcaagaactattctattagattaattt-tcagaaattatacattaagatcattgaaagataatcccacacttaccttagaatt 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 27906134 - 27906332
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctccca--ttttctttcaaaatcattctcataacctaatttct 112  Q
    |||| |||| ||||||||||| || ||| ||||||| |||| | |||||||||||| ||  ||  ||||||||||||||||   ||| | ||||||| ||    
T  27906134 acattatagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaaatcaacatcacaccctaatt-ct 27906232  T
Q  113 caattt-atctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattggagga 210  Q
    |||||| |||| ||| ||||||||| | |  ||||||| |||||| ||||| |||| |||||||||| |||||||||||||||| |||| ||||| ||||    
T  27906233 caattttatcttcaagaactattctattatattaattt-tcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgcagga 27906331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 14486666 - 14486713
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttacct 197  Q
    |||||| |||||||||| ||||||||||||||| || |||||||||||    
T  14486666 tcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 6033 - 5852
Alignment:
Q  25 ttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccat-tttctttcaaaatcattctcataacctaatttctcaattt-atct 122  Q
    ||||||||||| ||| || ||||||| |||| || |||||||| || ||  ||  |||||||||||||||  |||||| ||||||| |||||||| ||||    
T  6033 ttaagaaatcatacataacatcaaattacaacatgttaaacataattcttacacctttctttcaaaatcagcctcataccctaatt-ctcaattttatct 5935  T
Q  123 ccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
     ||| ||||||||  | |  ||||||| |||||| ||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  5934 tcaagaactattcaattagattaattt-tcagaaattatatattataatcattgaaagataatcccacccttaccttagaattg 5852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 23756 - 23564
Alignment:
Q  15 acatcataggttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccat--tttctttcaaaatcattctcataacctaatttct 112  Q
    |||| |||| ||||||||||| || ||| ||||||| |||| | |||||||||||| ||  |||  |||||||||||||||   ||| | ||||||| ||    
T  23756 acattatagattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaaatcagcatcacaccctaatt-ct 23658  T
Q  113 caattta-tctccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    ||||||  ||| ||| ||||||||||| |  ||||||| |||||| ||||| |||| ||||||| || ||||||||||||||||||||| |||||    
T  23657 caattttgtcttcaagaactattcttttagattaattt-tcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattg 23564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 14016 - 13889
Alignment:
Q  79 tttctttcaaaatcattctcataacctaatttctcaattta--tctccaaaactattctttcaagttaatttctcagaatttatatattaagatcattga 176  Q
    ||||||||||||||  ||||||| ||||||| ||||||||   |||  ||||||||||  | |  ||||||| |||||| ||||||||||  ||||||||    
T  14016 tttctttcaaaatctgtctcataccctaatt-ctcaattttattcttaaaaactattcaattagattaatttttcagaaattatatattataatcattga 13918  T
Q  177 aggataatcccacccttaccttacaattg 205  Q
    | ||||||||||||||||||||| |||||    
T  13917 aagataatcccacccttaccttagaattg 13889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 9341 - 9467
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattggaggaagattta-acacagcaaatcag-ctcctaagtt-ttccc 246  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| ||||| ||  |||   | ||||||||| ||||  ||||||||| | |||    
T  9341 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgtag--agacagagacacagcaattcagtttcctaagttctcccc 9438  T
Q  247 ccttgttcttggtttctcttgctttctct 275  Q
    |||||||||||||||||||||||| ||||    
T  9439 ccttgttcttggtttctcttgcttcctct 9467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 1962 - 1907
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| |||||||||||||||||||||||||||    
T  1962 tcagaaattatatattatgactattgaaagataatcccacccttaccttacaattg 1907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 22461153 - 22461216
Alignment:
Q  142 ttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    ||||||| |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  22461153 ttaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 22461216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 22467777 - 22467840
Alignment:
Q  142 ttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    ||||||| |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  22467777 ttaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 22467840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 34829964 - 34830144
Alignment:
Q  25 ttaagaaatcacacagaatatcaaatcacaatatattaaacatgatcctcccat-tttctttcaaaatcattctcataacctaatttctcaattt-atct 122  Q
    ||||||||||| || ||  ||||||| |||| | |||||||||||| ||  ||| |||||||||||||||   ||||| ||||||| |||||||| ||||    
T  34829964 ttaagaaatcatactgatcatcaaattacaacacattaaacatgattcttacatctttctttcaaaatcagcatcataccctaatt-ctcaattttatct 34830062  T
Q  123 ccaa-aactattctttcaagttaatttctcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
     ||| ||||||||| | |  || |||| |||||| ||||| ||||| || |||||| ||||||||||||||||||||| |||||    
T  34830063 tcaagaactattctattagattgattt-tcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattg 34830144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 19236905 - 19236960
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  19236905 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 19236960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 24320720 - 24320665
Alignment:
Q  150 tcagaatttatatattaagatcattgaaggataatcccacccttaccttacaattg 205  Q
    |||||| |||||||||| ||  |||||| ||||||||||||||||||||| |||||    
T  24320720 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 24320665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 73297 - 73337
Alignment:
Q  157 ttatatattaagatcattgaaggataatcccacccttacct 197  Q
    ||||| |||| |||||||||| |||||||||||||||||||    
T  73297 ttatacattatgatcattgaaagataatcccacccttacct 73337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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