View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8121_high_5 (Length: 240)
Name: NF8121_high_5
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 26425422 - 26425555
Alignment:
| Q |
25 |
gaagagaatcaaaatcaaaagataaaaggcatgcctcaccaacaagttccacaacctcaagatttctcagctgaagcattggacaaagagcttccaccca |
124 |
Q |
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| T |
26425422 |
gaagaggatcaaaatcaaaagataaaaggcatgcctcaccaacaagttccacaacctcaagatttctcagctgaagcattggacaaagagcttccaccca |
26425521 |
T |
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| Q |
125 |
cagaagcctaaat---tagtccttttggcttttt |
155 |
Q |
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| T |
26425522 |
ctgaagcctaaattagtagtccttttggcttttt |
26425555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 26424133 - 26424205
Alignment:
| Q |
158 |
tatcattatttggtaagcttctcggaaagaaaaagttacaaataaaattaagtttatttaaatatacctttta |
230 |
Q |
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| T |
26424133 |
tatcattatttggtaagcttctaagaaagaaaaagttacgaataaaattaagtttatttaaatatacctttta |
26424205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 26423640 - 26423704
Alignment:
| Q |
26 |
aagagaatcaaaatcaaaagataaaaggcatgcctcaccaacaagttccacaacctcaagatttc |
90 |
Q |
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| T |
26423640 |
aagaggatcaaaatcaaaagacaaaaggcctgcctcaccaacaagttccacaatctgaagatttc |
26423704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 26423882 - 26423953
Alignment:
| Q |
83 |
aagatttctcagctgaagcattggacaaagagcttccacccacagaagcctaaattagtccttttggcttttt |
155 |
Q |
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| T |
26423882 |
aagatttctcagtcgaagcattggacaaagagtttctatccatagaagcctaaa-tagtccttttgacttttt |
26423953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 12296896 - 12296948
Alignment:
| Q |
152 |
tttttgtatcattatttggtaagcttctcggaaagaaaaagttacaaataaaa |
204 |
Q |
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| T |
12296896 |
tttttttatcattatttggtaagcttctaggaaaggaaaaattaaaaaaaaaa |
12296948 |
T |
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