View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8121_low_1 (Length: 500)

Name: NF8121_low_1
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8121_low_1
NF8121_low_1
[»] chr8 (1 HSPs)
chr8 (15-500)||(45460218-45460703)


Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 500
Target Start/End: Original strand, 45460218 - 45460703
Alignment:
Q  15 actttcttcggctgtcggaagccaagcaactataacagccagcttctccatcattaaccaatgtctagcactaaattgttttcccagagtaaaagtcatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45460218 actttcttcggctgtcggaagccaagcaactataacagccagcttctccatcattaaccaatgtctagcactaaattgttttcccagagtaaaagtcatt 45460317  T
Q  115 cacacatcaaaaacaatacatggccagatttacatctccgatgtcaactggttattgatgattttcagtctagctgtgacggttggtttcagagacatgg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45460318 cacacatcaaaaacaatacatggccagatttacatctccgatgtcaactggttattgatgattttcagtctagctgtgacggttggtttcagagacatgg 45460417  T
Q  215 tgaagattggcaacgcaacaagtatgccannnnnnncatttctcttggtgttaattaatgnnnnnnncttgagttattaatcaagagagtagctcccatt 314  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  45460418 tgaagattggcaacgcaacaagtatgccatttttttcatttctcttggtgttaattaatgtttttttcttgagttattaatcaagagagtagctcccatt 45460517  T
Q  315 tttgcattaaactagaaaatgaagagaagtcttnnnnnnntgaaaacttggtaaactaaacagggaatgcagataaaagaattgatgtttaatatatact 414  Q
    |||||||||||||||||||||||| ||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45460518 tttgcattaaactagaaaatgaagggaagtcttaaaaaaatgaaaagttggtaaactaaacagggaatgcagataaaagaattgatgtttaatatatact 45460617  T
Q  415 accagcacaggcacagtgcagttatgtccgaaccacagtacttttgatttgattaaattaaggatggttatatggaacttgtttac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45460618 accagcacaggcacagtgcagttatgtccgaaccacagtacttttgatttgattaaattaaggatggttatatggaacttgtttac 45460703  T

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