View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8121_low_11 (Length: 248)

Name: NF8121_low_11
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8121_low_11
NF8121_low_11
[»] chr1 (8 HSPs)
chr1 (10-245)||(40552474-40552709)
chr1 (10-51)||(48569435-48569476)
chr1 (10-50)||(10308360-10308400)
chr1 (10-50)||(46923664-46923704)
chr1 (17-52)||(33686711-33686746)
chr1 (17-50)||(18169181-18169214)
chr1 (10-51)||(30308264-30308305)
chr1 (10-50)||(23943678-23943718)
[»] chr4 (6 HSPs)
chr4 (10-54)||(54703520-54703564)
chr4 (10-51)||(21713325-21713366)
chr4 (10-54)||(31825889-31825933)
chr4 (10-52)||(21710697-21710739)
chr4 (17-51)||(49063138-49063172)
chr4 (8-53)||(51242736-51242781)
[»] chr8 (3 HSPs)
chr8 (10-51)||(15743349-15743390)
chr8 (10-50)||(35161494-35161534)
chr8 (10-50)||(43693725-43693765)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-49)||(256391-256430)
[»] chr7 (4 HSPs)
chr7 (17-52)||(39476413-39476448)
chr7 (11-49)||(4035313-4035351)
chr7 (9-50)||(18236718-18236759)
chr7 (17-49)||(23943807-23943839)
[»] chr2 (2 HSPs)
chr2 (10-49)||(34620042-34620081)
chr2 (10-53)||(41192543-41192586)
[»] chr3 (1 HSPs)
chr3 (11-52)||(39417955-39417996)
[»] chr6 (1 HSPs)
chr6 (10-54)||(5741563-5741607)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 40552709 - 40552474
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttattcaatgtcgttaaggtcacgtagactttaaaattgtaggtgtaaaaaagaaacctc 109  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40552709 cagggcctgagcaaaatgtgcaggttgaagagcagaattcttattcaatgtccttaaggtcacatagactttaaaattgtaggtgtaaaaaagaaacctc 40552610  T
Q  110 aaaagtagattttgaaagaccaaaaggtataagcccatatgaaaatgcttcgttttcacctttggtcgttaccttgnnnnnnnctttgctgtgtaagtaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||    
T  40552609 aaaagtagattttgaaagaccaaaaggtataagcccatatgaaaatgcttcgttttcacgtttggtcgttaccttgtttttttctttgctgtgtaagtaa 40552510  T
Q  210 taatggttttatgccgattcgcttattctcctgcaa 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  40552509 taatggttttatgccgattcgcttattctcctgcaa 40552474  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 48569435 - 48569476
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 51  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  48569435 cagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 48569476  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 10308400 - 10308360
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  10308400 cagggcgcgagcaaaatgtgcagggtgaagagcagaattct 10308360  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 46923704 - 46923664
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  46923704 cagggcgcgagcaaaatgtgcagggtgaagagcagaattct 46923664  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 33686711 - 33686746
Alignment:
Q  17 cgagcaaaatgtgcaggttgaagagcagaattctta 52  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33686711 cgagcaaaatgtgcaggatgaagagcagaattctta 33686746  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 18169214 - 18169181
Alignment:
Q  17 cgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    ||||||||||||||||| ||||||||||||||||    
T  18169214 cgagcaaaatgtgcagggtgaagagcagaattct 18169181  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 30308305 - 30308264
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 51  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  30308305 cagggcgcgagcaaaatgtgcagggtgaagagctgaattctt 30308264  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 23943678 - 23943718
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  23943678 cagggcgcaagcaaaatgtgcagggtgaagagcagaattct 23943718  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 54703564 - 54703520
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttatt 54  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  54703564 cagggcgcgagcaaaatgtgcagggtgaagagcagaattcttatt 54703520  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 21713325 - 21713366
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 51  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  21713325 cagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 21713366  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 31825889 - 31825933
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttatt 54  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||    
T  31825889 cagggcgcgagcaaaatgtgcagggtgaagagcagaattcctatt 31825933  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 21710739 - 21710697
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattctta 52  Q
    |||||| ||||||||||||||||| |||||||||| |||||||    
T  21710739 cagggcacgagcaaaatgtgcagggtgaagagcagtattctta 21710697  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 49063172 - 49063138
Alignment:
Q  17 cgagcaaaatgtgcaggttgaagagcagaattctt 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  49063172 cgagcaaaatgtgcaggttgaagagcagtattctt 49063138  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 51242781 - 51242736
Alignment:
Q  8 cacagggcccgagcaaaatgtgcaggttgaagagcagaattcttat 53  Q
    |||||||| ||||||||||||| ||| |||| ||||||||||||||    
T  51242781 cacagggcgcgagcaaaatgtgtagggtgaaaagcagaattcttat 51242736  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 15743349 - 15743390
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattctt 51  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  15743349 cagggcgcgagcaaaatgtgcagggtgaagagcagaattctt 15743390  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 35161534 - 35161494
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    |||||| ||||||||||||||||| ||||||| ||||||||    
T  35161534 cagggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 43693725 - 43693765
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    |||||| ||||||||||||||||| ||||||||| ||||||    
T  43693725 cagggcgcgagcaaaatgtgcagggtgaagagcaaaattct 43693765  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 256430 - 256391
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattc 49  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  256430 cagggcctgagcaaaatgtgcagggtgaagagcagaattc 256391  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 39476448 - 39476413
Alignment:
Q  17 cgagcaaaatgtgcaggttgaagagcagaattctta 52  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39476448 cgagcaaaatgtgcagggtgaagagcagaattctta 39476413  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 4035313 - 4035351
Alignment:
Q  11 agggcccgagcaaaatgtgcaggttgaagagcagaattc 49  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  4035313 agggcgcgagcaaaatgtgcagggtgaagagcagaattc 4035351  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 18236759 - 18236718
Alignment:
Q  9 acagggcccgagcaaaatgtgcaggttgaagagcagaattct 50  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  18236759 acagggcgcgagcaaaatatgcaggatgaagagcagaattct 18236718  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 23943807 - 23943839
Alignment:
Q  17 cgagcaaaatgtgcaggttgaagagcagaattc 49  Q
    ||||||||||||||||| |||||||||||||||    
T  23943807 cgagcaaaatgtgcagggtgaagagcagaattc 23943839  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 34620042 - 34620081
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattc 49  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  34620042 cagggcgcgagcaaaatgtgcagggtgaagagcagaattc 34620081  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 41192543 - 41192586
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttat 53  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||    
T  41192543 cagggcgcgaacaaaatgtgcagggtgaagagcagaattcttat 41192586  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 39417955 - 39417996
Alignment:
Q  11 agggcccgagcaaaatgtgcaggttgaagagcagaattctta 52  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||    
T  39417955 agggcgcgagcaaaatgtggagggtgaagagcagaattctta 39417996  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 5741563 - 5741607
Alignment:
Q  10 cagggcccgagcaaaatgtgcaggttgaagagcagaattcttatt 54  Q
    |||||| ||||| ||| ||||||| ||||||||||||||||||||    
T  5741563 cagggcgcgagcgaaaagtgcagggtgaagagcagaattcttatt 5741607  T

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