View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8121_low_12 (Length: 240)
Name: NF8121_low_12
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 1079650 - 1079833
Alignment:
| Q |
40 |
tacatagtattattatgcaagcccctaaaccacttgaaaattgtcgggaatttgaatctcaacgttttaccataaagattcccatcataacaatctggag |
139 |
Q |
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| T |
1079650 |
tacaaagtattattatgcaagcccctaaaccacttgaaaattgtcgggaatttgaatctcaacgttttaccataaagattcccatcataacaatctggag |
1079749 |
T |
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| Q |
140 |
cagtgtcgtgatccaaaataattttcgatatctgaaaggtggacatcttatccatccacttgtcacttatggaaatgttgtatc |
223 |
Q |
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| T |
1079750 |
cagtgtcgtgatccaaaataattttcaatatctgaaaggtggacttcttatccatccgcttgtcacttttggaaatgttgtatc |
1079833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 54043420 - 54043240
Alignment:
| Q |
46 |
gtattattatgcaagcccctaaacca-cttgaaaattgtcgggaatttgaatctcaacgttttaccataaagattcccatcataac-aatctggagcagt |
143 |
Q |
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| T |
54043420 |
gtattattacgcaagcccgtaaatctgcttgcaaattgtcgagaatttgaatccccacgttttaccatatagattcccatcatagccaatctggatcggt |
54043321 |
T |
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| Q |
144 |
gtcgtgatccaaaataattttcgatatctgaaaggtggacatcttatccatccacttgtcacttatggaaatgttgtatct |
224 |
Q |
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| T |
54043320 |
gtcgtgatccaaaatccttttcaatagccggaaggtgtacatcttatccatcagcttgtcacttttggaaatgttgtatct |
54043240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1078496 - 1078536
Alignment:
| Q |
1 |
tttcttatttttcattatgattgggaccgtagggagtagta |
41 |
Q |
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| T |
1078496 |
tttcatatttttcattatgattgagaccgtagggagtagta |
1078536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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