View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8121_low_14 (Length: 214)
Name: NF8121_low_14
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 43895065 - 43895246
Alignment:
| Q |
17 |
tgctctaacaagtgttgctcctaaaccccaccatagcacaatagaaccttcttctttgattatcttcatggtgcaatccaagatgcctttgtatttcaat |
116 |
Q |
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| T |
43895065 |
tgctctaacaagtgttgctcctaaaccccaccatagcacaatagaaccttcttctttgattatcttcatggtgcaatccaagatgcctttgtatttcaat |
43895164 |
T |
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| Q |
117 |
gaagaagatgtttgagcttgtaatcttgtctttataacatctgtagggtagttgaaaagccaacttgctatcccctgctaca |
198 |
Q |
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| T |
43895165 |
gaagaagatgtttgagcttgtaatcttgtctttataacatctgtagggtagttgaaaagccaacttgctatcccctgctaca |
43895246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 43891970 - 43892143
Alignment:
| Q |
17 |
tgctctaacaagtgttgctcctaaaccccaccatagcacaatagaaccttcttctttgattatcttcatggtgcaatccaagatgcctttgtatttcaat |
116 |
Q |
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||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
43891970 |
tgctctaacaagtgttgctcctaaacctctccatagcacaattgaaccttcttctttgattatcttcaaggtacaatccaagatgcctttgtatttcaat |
43892069 |
T |
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| Q |
117 |
gaagaagatgtttgagcttgtaatcttgtctttataacatctgtagggtagttgaaaagccaacttgctatccc |
190 |
Q |
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| T |
43892070 |
gaagaagatgtttgagcttgtaatcttgtctttataacatctgtagggtagttgaaaagccaactagctatccc |
43892143 |
T |
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