View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8121_low_2 (Length: 496)
Name: NF8121_low_2
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 34330824 - 34331252
Alignment:
| Q |
18 |
ggttgcttatgaaattccttttgctttcatatatatgtgtttcaggtctgtgtaccaatttgtcctgtcaccaattataaagctgttgaaaccaaacatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34330824 |
ggttgcttatgaaattccttttgctttcatatatatgtgtttcaggtctgtgtaccaatttgtcctgtcaccaattataaagctgttgaaaccaaacatg |
34330923 |
T |
|
| Q |
118 |
tcatattctctttaccctaccttttttccttactcttcaatgaaacaaattcccagccaatgatctgcttcacacacttatgtattattataagcaaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34330924 |
tcatattctctttaccctaccttttttccttactcttcaatgaaacaaattcccagccaatgatctgcctcacacacttatgtattattataagcaaaca |
34331023 |
T |
|
| Q |
218 |
acaaaaagtctgaatttttaaaaatagaagatatcctaactagattatcatatctatgtggatagagttattgaattatatatatgtgatgcttcattat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34331024 |
acaaaaagtctgaatttttaaaaatagaagatatcctaactagattatcatatctatgtggatagagttattgaattatatatatgtgatgcttcattat |
34331123 |
T |
|
| Q |
318 |
ttgtttacattatgaccatctattagtagctatctctgtctagagatttaatcattgaaactaatttcagttcattttgattttaagctgaagataacaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34331124 |
ttgtttacattatgaccatctattagtagctatctctgtctagagatttaatcattgaaactaatttcagttcattttgattttaagctgaagataacaa |
34331223 |
T |
|
| Q |
418 |
cagtagcttgggctaccacagaatacagt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34331224 |
cagtagcttgggctaccacagaatacagt |
34331252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University