View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8121_low_3 (Length: 467)
Name: NF8121_low_3
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 27972011 - 27972447
Alignment:
| Q |
18 |
attatttagagttaattaaccataagaagaaataaggaatgctataaaataggaagaaaaagagttatttacctcataagttctattgtcacctaatttg |
117 |
Q |
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| T |
27972011 |
attatttagagttaattaaccataagaagaaattaggaatgctataaaataggaagaaaaagagttatttacctcataagttctattgtcacctaatttg |
27972110 |
T |
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| Q |
118 |
atcttggtaacaaacttcctatctaacgtactagcagccacaacaacggcccagggtgaaaaatttcgtagggatgaaggatgtgggcctgcattccctg |
217 |
Q |
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| T |
27972111 |
atcttggtaacaaacttcctatctaacgtactagcagccacaacaacggcccagggtgaaaaatttcgtagggatgaaggatgtgggcccgcgttccctg |
27972210 |
T |
|
| Q |
218 |
ctgcgaatattgtcagcactccatgtttcatagcatggaatgatccaatggacaatccatctctgaaatagatagaatcttcgttttcatttgatgaaag |
317 |
Q |
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| T |
27972211 |
ctgcgaatattgtcagcactccatgtttcatagcatggaatgatccaatggacaatccatctctgaaatagatagaatcttcgttttcatttgatgaaag |
27972310 |
T |
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| Q |
318 |
tgagactgataatatatcaaccccatctgcaattgcatcatcaaatgcggcgagaatatttgcatcgcagcagtgtttagaccaacacgctttatagaca |
417 |
Q |
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| T |
27972311 |
tgagactgataatatatcaaccccatctgcaattgcatcatcaaatgcggcgagaatatttgcatcgtagcagtgtttagaccaacacactttatacaca |
27972410 |
T |
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| Q |
418 |
gcaacgcgtgcagatggaactcctcctcttgttgttc |
454 |
Q |
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| T |
27972411 |
gcaacgcgtgcagatggaactcctcctcttattgttc |
27972447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 3726809 - 3726745
Alignment:
| Q |
75 |
aaaagagttatttacctcataagttctattgtcacctaatttgatcttggtaacaaacttcctat |
139 |
Q |
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| T |
3726809 |
aaaagagtaatttacctcatatgttctattgtctctaaatttgaactaggtaacatactttctat |
3726745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 34823175 - 34823119
Alignment:
| Q |
318 |
tgagactgataatatatcaaccccatctgcaattgcatcatcaaatgcggcgagaat |
374 |
Q |
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| T |
34823175 |
tgagattgatattatgtcaaccctatcagcaatggcatcatcaaatgcggcaagaat |
34823119 |
T |
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