View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8121_low_5 (Length: 336)
Name: NF8121_low_5
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 114 - 332
Target Start/End: Complemental strand, 35633019 - 35632801
Alignment:
| Q |
114 |
taatgttttcttgtatatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaa |
213 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||| | |||||| |
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| T |
35633019 |
taatgttttcttgtatatttatcaggtcagtagaactattggtgatgcatatttgaaaaggcctgaatttatgcttcacgagtcgtttcccaaatttaaa |
35632920 |
T |
|
| Q |
214 |
aaagttcctgaatcttctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctg |
313 |
Q |
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||||||||| || ||| || || ||||||| ||||| |||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||| |||| |
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| T |
35632919 |
aaagttcctaaaccttgtacaagtggtgtgccatcagcagaaccagagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctg |
35632820 |
T |
|
| Q |
314 |
ttggactttggaagttctt |
332 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
35632819 |
ttggactttgggagttctt |
35632801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 324
Target Start/End: Complemental strand, 35629865 - 35629655
Alignment:
| Q |
114 |
taatgttttcttgtatatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| || ||||||||||||| |||||||||||| | || ||| |
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| T |
35629865 |
taatgttttcttgtatatttattaggttagtagaagtattggtgatacatatctgaaaaggcttgaatttacgctgtgcgaatcgtttcccaaattcaaa |
35629766 |
T |
|
| Q |
214 |
aaagttcctgaatcttctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctg |
313 |
Q |
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|||||||||||| | | || |||||||||| |||||| ||||||||||||| ||||| |||||||||| | ||| | ||||||| ||||||||| |||| |
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| T |
35629765 |
aaagttcctgaaccatttactagaggtgtggtatcagcagaaccagagatgcgtactagagttttaacatatagtgacaagtttcttatatttgcttctg |
35629666 |
T |
|
| Q |
314 |
ttggactttgg |
324 |
Q |
| |
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|||||||||| |
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|
| T |
35629665 |
atggactttgg |
35629655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 324
Target Start/End: Complemental strand, 35636267 - 35636071
Alignment:
| Q |
128 |
atatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaaaaaagttcctgaatc |
227 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||||||| | ||||||||||| || |||||||||| || | ||| || |||| |||||| | |
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| T |
35636267 |
atatgtattaggttagtagaagtattggtgatacatatttgaagaggcctgaatttagtttggacgaatcgttccccaagtttgaagaagtgcctgaacc |
35636168 |
T |
|
| Q |
228 |
ttctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatttgcctctgttggactttgg |
324 |
Q |
| |
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| || |||||| ||| |||||| ||| || |||||| | ||| || ||||||||||| ||||||||| |||||||| |||| |||||||||| |
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|
| T |
35636167 |
atttattagaggcgtgttatcagcagagccggagatgcgttctagagatttaacagagaacgataagtttctgatatttgcttctgatggactttgg |
35636071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 35630650 - 35630566
Alignment:
| Q |
3 |
aagaatgacaactttgcttcattcgacgaa-gacc--ctctcgcaacttcgactaatctcaaaaggcattgctatcgagaatttt |
84 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | || ||||||||| ||||| ||||||||||| ||||||||| ||||||||| |
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|
| T |
35630650 |
aagaatgacaacttagctttattcgacgaatggccctctctcgcaagttcgattaatctcaaaaaccattgctatggagaatttt |
35630566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 35637083 - 35637017
Alignment:
| Q |
18 |
gcttcattcgacgaagaccctctcgcaacttcgactaatctcaaaaggcattgctatcgagaatttt |
84 |
Q |
| |
|
|||| ||||||| ||||||||| |||| ||||| | |||||||||||||||||||| || |||||| |
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|
| T |
35637083 |
gctttattcgaccaagaccctcatgcaagttcgattgatctcaaaaggcattgctatggacaatttt |
35637017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 10338350 - 10338446
Alignment:
| Q |
116 |
atgttttcttgtatatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaatttttaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10338350 |
atgttttcttgtatatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaacttttaa |
10338446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 10298973 - 10299190
Alignment:
| Q |
107 |
ttggttgtaatgttttcttgtatatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||| | | |||||||||| ||| |||||| || || | |
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|
| T |
10298973 |
ttggttgtaatgttttcttgtatattgattaggtaagtagagctattggtgatgcatatctgaagaggtctgaatttactttgcgcgaatcattccccaa |
10299072 |
T |
|
| Q |
207 |
ttttaaaaaagttcctgaatcttctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatattt |
306 |
Q |
| |
|
|| ||| |||||| ||| | | || |||||||||||||||| ||||||||||||| ||||| |||||||||||| | | |||||||| ||||||| |
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|
| T |
10299073 |
attggaaatagttccggaaccctttacaagaggtgtgctatcagcagaaccagagatgcatactagagttttaacagataatgataagtttattatattt |
10299172 |
T |
|
| Q |
307 |
gcctctgttggactttgg |
324 |
Q |
| |
|
|| |||| |||||||||| |
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| T |
10299173 |
gcttctgatggactttgg |
10299190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 10319405 - 10319622
Alignment:
| Q |
107 |
ttggttgtaatgttttcttgtatatttattaggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||| | | |||||||||| ||| |||||| || || | |
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|
| T |
10319405 |
ttggttgtaatgttttcttgtatattgattaggtaagtagagctattggtgatgcatatctgaagaggtctgaatttactttgcgcgaatcattccccaa |
10319504 |
T |
|
| Q |
207 |
ttttaaaaaagttcctgaatcttctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatattt |
306 |
Q |
| |
|
|| ||| |||||| ||| | | || |||||||||||||||| ||||||||||||| ||||| |||||||||||| | | || ||||| ||||||| |
|
|
| T |
10319505 |
attggaaatagttccggaaccctttacaagaggtgtgctatcagcagaaccagagatgcatactagagttttaacagataatgatcagtttattatattt |
10319604 |
T |
|
| Q |
307 |
gcctctgttggactttgg |
324 |
Q |
| |
|
|| |||| |||||||||| |
|
|
| T |
10319605 |
gcttctgatggactttgg |
10319622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 10336520 - 10336738
Alignment:
| Q |
107 |
ttggttgtaatgttttcttgtatatttatt-aggttagtagaactattggtgatgcatatttgaaaatgcctgaatttacgctgcacgaatcgtttccaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||| | | |||||||||| ||| |||||| || || | |
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|
| T |
10336520 |
ttggttgtaatgttttcttgtatattgatttaggttagtagagctattggtgatgcatatctgaagaggtctgaatttactttgcgcgaatcattcccca |
10336619 |
T |
|
| Q |
206 |
tttttaaaaaagttcctgaatcttctaatagaggtgtgctatcagtagaaccagagatgtttactaaagttttaacagagagtaataagtttcatatatt |
305 |
Q |
| |
|
|| ||| |||||| ||| | | || |||||||||||||||| ||||||||||||| ||||| |||||||||||| | | || ||||| |||||| |
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|
| T |
10336620 |
aattggaaatagttccggaaccctttacaagaggtgtgctatcagcagaaccagagatgcatactagagttttaacagataatgatcagtttattatatt |
10336719 |
T |
|
| Q |
306 |
tgcctctgttggactttgg |
324 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
10336720 |
tgcttctgatggactttgg |
10336738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 10338441 - 10338498
Alignment:
| Q |
275 |
ttttaacagagagtaataagtttcatatatttgcctctgttggactttggaagttctt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10338441 |
ttttaacagagagtaataagtttcatatatttgcctctgttggactttgggagttctt |
10338498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 10318508 - 10318587
Alignment:
| Q |
5 |
gaatgacaactttgcttcattcgacgaagaccctctcgcaacttcgactaatctcaaaaggcattgctatcgagaatttt |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | |||| ||||||| |||| ||||||||| ||||||||| |
|
|
| T |
10318508 |
gaatgacaactttgctttattcgacgaagaccctctcgggagatcgattaatctccaaagccattgctatggagaatttt |
10318587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 10335752 - 10335831
Alignment:
| Q |
5 |
gaatgacaactttgcttcattcgacgaagaccctctcgcaacttcgactaatctcaaaaggcattgctatcgagaatttt |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | |||| |||||| |||| ||||||||| ||||||||| |
|
|
| T |
10335752 |
gaatgacaactttgctttattcgacgaagaccctctcgggagatcgattaatctacaaagccattgctatggagaatttt |
10335831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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