View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8121_low_6 (Length: 311)
Name: NF8121_low_6
Description: NF8121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8121_low_6 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 4748 - 5017
Alignment:
| Q |
18 |
cttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgttaga |
117 |
Q |
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| T |
4748 |
cttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcacaagatgtgcacgttaga |
4847 |
T |
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| Q |
118 |
attgttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaaca |
217 |
Q |
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| T |
4848 |
attgttgagccattcaaaaatcaatagttttagaagcatgaggaaac--gagcttgacctattgatcaagtttatgaaagaagcagccaatgatggaaca |
4945 |
T |
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| Q |
218 |
atggttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaagaat |
289 |
Q |
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| T |
4946 |
acggttgatataagtgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaagaat |
5017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 27411953 - 27412216
Alignment:
| Q |
22 |
tgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgttagaattg |
121 |
Q |
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| T |
27411953 |
tgaggcagcacaactcatgttttacaatcagaaggatgtgagcttcagtgtatacggttcgtattggcgaaacatgcgcaagatgtgcacattagaattg |
27412052 |
T |
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| Q |
122 |
ttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatgg |
221 |
Q |
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| T |
27412053 |
ttgagccatacaaaaatcaacagttttagaagtatgagggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaacaacgg |
27412152 |
T |
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| Q |
222 |
ttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaa |
285 |
Q |
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| T |
27412153 |
ttgatataagtgccaaggttgctgcacttacagctgatatgacttgcataatagtttttgggaa |
27412216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 285
Target Start/End: Complemental strand, 8729 - 8466
Alignment:
| Q |
22 |
tgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgttagaattg |
121 |
Q |
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| T |
8729 |
tgaggcagtataattcatgttttataatcagaaggatgttagcttcagtgtatacggttcatattggcgaaacatgcgcaagatgtgcacattagaattg |
8630 |
T |
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| Q |
122 |
ttgagccattcaaaaatcaacagttttagaagcatgagagaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatgg |
221 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| || |
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| T |
8629 |
ttgagccattcaaaaatcaacagttttagaattatgagggaacaagagcttgacctattgatcaagtttataagagaagcagccaatgatggaacaacgg |
8530 |
T |
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| Q |
222 |
ttgatataactgccaaggtttctacactcactgctgatatgacttgtagaatggtttttgggaa |
285 |
Q |
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| T |
8529 |
ttgatataagtgccaaggttgctgcacttacagttgatatgacttgcataatagtttttgggaa |
8466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 60 - 285
Target Start/End: Original strand, 38258201 - 38258426
Alignment:
| Q |
60 |
tgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgag |
159 |
Q |
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||||||| ||| ||| ||||||||||||||||||||| | || |||||||| |||||||||||||||||| ||||||| || |||| || |||||| |
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| T |
38258201 |
tgagttttggtgaatatggttcttattggcgaaacatgagaaaaatgtgcactttagaattgttgagccatgcaaaaataaattcatttaaaaccatgag |
38258300 |
T |
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| Q |
160 |
agaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgat |
259 |
Q |
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|||||||| ||||||||||| || |||||| | | |||| |||||||| |||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
38258301 |
ggaacaagaacttgacctattgataaagtttttaagagaaaagaccaatgatagaacaaaggttgatttaagcaccaaggtttctacactcactgctgat |
38258400 |
T |
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| Q |
260 |
atgacttgtagaatggtttttgggaa |
285 |
Q |
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| T |
38258401 |
atgagttgtagaatggttttggggaa |
38258426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 285
Target Start/End: Original strand, 38261957 - 38262176
Alignment:
| Q |
60 |
tgagtttcagtgtatacggttcttattggcgaaacatgcgcaagatgtgcacgttagaattgttgagccattcaaaaatcaacagttttagaagcatgag |
159 |
Q |
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||||||| ||| ||| ||||||||||||||||| ||| | || |||||||| |||||||||||||||||| ||||||| || |||| || |||||| |
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| T |
38261957 |
tgagttttggtgaatatggttcttattggcgaaatatgagaaaaatgtgcactttagaattgttgagccatgcaaaaataaattcatttaaaaccatgag |
38262056 |
T |
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| Q |
160 |
agaacaagagcttgacctattcatcaagtttatgaaagaagcagccaatgatggaacaatggttgatataactgccaaggtttctacactcactgctgat |
259 |
Q |
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| T |
38262057 |
ggaacaagaacttgacctattgataatgtttctaaa------agctaatgacggaacaaaggttgatttaagtgctaaagtttctacactcgcggctgat |
38262150 |
T |
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| Q |
260 |
atgacttgtagaatggtttttgggaa |
285 |
Q |
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|||| ||||||||||||||| ||||| |
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| T |
38262151 |
atgagttgtagaatggttttagggaa |
38262176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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