View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8122_low_10 (Length: 330)
Name: NF8122_low_10
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8122_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 36657249 - 36656968
Alignment:
| Q |
32 |
cagagaaatgtaaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcagga |
131 |
Q |
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| T |
36657249 |
cagagaaatgtaaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcagga |
36657150 |
T |
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| Q |
132 |
tgaacattttatgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataaca |
231 |
Q |
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| T |
36657149 |
tgaacattttatgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataaca |
36657050 |
T |
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| Q |
232 |
atggattcatattttctatttcatcaatgcatgtgttattagtgaaaaaatgacactccaaaaggtctgtagtaccaaatttg |
314 |
Q |
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| T |
36657049 |
atggattcatattttctatttcatcaatgcatgtgttattagtga-aaaatgacactccaaaaggtctgtagtaccaaatttg |
36656968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 37 - 314
Target Start/End: Original strand, 34076174 - 34076450
Alignment:
| Q |
37 |
aaatgtaaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcaggatgaac |
136 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
34076174 |
aaatgtaaatttgtatgaaatttaactattgcatgtagattagagcaatctgtcttctagttttgtattccaagtgacaggccaaaatagcaggatgaac |
34076273 |
T |
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| Q |
137 |
attttatgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataacaatgga |
236 |
Q |
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| T |
34076274 |
attttctgtggtttagttttgtaagtgttgcttcaacttttgaatgtggaagtttaggtacagtctcaatagtttcatgtagggaatgtataacaatgga |
34076373 |
T |
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| Q |
237 |
ttcatattttctatttcatcaatgcatgtgttattagtgaaaaaatgacactccaaaaggtctgtagtaccaaatttg |
314 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
34076374 |
ttcatattttctattacatcaatgcatgtgttattagtg-aaaaatgacactccaaaaggtctgcagtaccaaatttg |
34076450 |
T |
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