View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8122_low_14 (Length: 257)
Name: NF8122_low_14
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8122_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 3018929 - 3018694
Alignment:
| Q |
22 |
cttcccaaaatactaattgctcggattatataatccgaatggttcttaaattgctcatgtctatccaaagtttgtgaatatgcgtttggactatatttgc |
121 |
Q |
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| T |
3018929 |
cttcccaaaataccatttgctcggattatataattcgaaatatttttaaattgctcatgtctatccaaagtttgtgaatatacgtttggactatatttgc |
3018830 |
T |
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| Q |
122 |
cgaaaaaagtgtttgtcaaatagaacccaaaatgtgtcaaacccgtagaagaccatgttttgaggctcattgcaatgtataaaaagacatagttcaaatg |
221 |
Q |
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| T |
3018829 |
cgaaaaaagtgtttggcaaatagaacataaaatgtgtcaaacccgtagaagaccatgttttaaggctcattgcaatgtataaaaagacatagttcaaatg |
3018730 |
T |
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| Q |
222 |
tgtcagctcagattatatttgtagaattgtgtcagc |
257 |
Q |
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| T |
3018729 |
tgtcagctcagattatatttgtagaattgtgtcagc |
3018694 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 25690398 - 25690330
Alignment:
| Q |
138 |
caaatagaacccaaaatgtgtcaaacccgtagaagaccatgttttgaggctcattgcaatgtataaaaa |
206 |
Q |
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| T |
25690398 |
caaatagaatctaaaatgtgtcaaacccttagaagaccacgtttataggaagattgcaatgtataaaaa |
25690330 |
T |
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