View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8122_low_19 (Length: 239)
Name: NF8122_low_19
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8122_low_19 |
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| [»] scaffold0513 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 50832354 - 50832576
Alignment:
| Q |
1 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832354 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaat |
50832453 |
T |
|
| Q |
101 |
agtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatca |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832454 |
agtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatca |
50832553 |
T |
|
| Q |
201 |
gatgaaattatcaagcttcagat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
50832554 |
gatgaaattatcaagcttcagat |
50832576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 50843499 - 50843277
Alignment:
| Q |
1 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843499 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaat |
50843400 |
T |
|
| Q |
101 |
agtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatca |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843399 |
agtaaaagagtttagtagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatca |
50843300 |
T |
|
| Q |
201 |
gatgaaattatcaagcttcagat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
50843299 |
gatgaaattatcaagcttcagat |
50843277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32791977 - 32792199
Alignment:
| Q |
1 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32791977 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcatgtgcctctacattaaaacatctttttacatggataattctagcaat |
32792076 |
T |
|
| Q |
101 |
agtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatca |
200 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
32792077 |
agtaaaagagtttagtagctatttacagtctagtataacagtgtcaattccagcagtgaaactctttcctaagatgtagtttacttcattctcagcatca |
32792176 |
T |
|
| Q |
201 |
gatgaaattatcaagcttcagat |
223 |
Q |
| |
|
|||| ||||||||||||| |||| |
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| T |
32792177 |
gatgcaattatcaagcttgagat |
32792199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24534153 - 24534375
Alignment:
| Q |
1 |
cattccctatccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttaacatggataattctagcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24534153 |
cattccctatccaagctttaaatcctacagtcttagaaagaatagccatgtcatgtgcctctacattaaaacatctttttacatggataattctagcaat |
24534252 |
T |
|
| Q |
101 |
agtaaaagagtttagcagctgcttacagtctagtataacagtgtcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatca |
200 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24534253 |
agtaaaagagtttagtagctgtttacagtctagtataacagtgtcaattccagcagtgaaactctttcctaagatgcagtttacttaattctcagcatca |
24534352 |
T |
|
| Q |
201 |
gatgaaattatcaagcttcagat |
223 |
Q |
| |
|
|||| ||||||||||||| |||| |
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| T |
24534353 |
gatgcaattatcaagcttgagat |
24534375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 17720996 - 17721051
Alignment:
| Q |
144 |
tcaattccagcactgaaactctttcctaagatgcagtttactacattctcagcatc |
199 |
Q |
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||||| ||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17720996 |
tcaatcccaacagtgaaactctttcctaagatgcagtttactacattctcaacatc |
17721051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 7682 - 7628
Alignment:
| Q |
169 |
ctaagatgcagtttactacattctcagcatcagatgaaattatcaagcttcagat |
223 |
Q |
| |
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||||||||||| || ||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
7682 |
ctaagatgcagattgctacattctcagcatcagatgcaataatcaagcttgagat |
7628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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