View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8122_low_2 (Length: 492)
Name: NF8122_low_2
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8122_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 21244912 - 21244443
Alignment:
| Q |
18 |
ggatcgtgcttttgcaataagctctcttctgagaatttttcctgaagctgttttcggaacattttttatgaatgtcacccttcgcaatcttttgaacggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| | || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
21244912 |
ggatcgtgcttttgcaataagctctcttctgagaatttttcccgaagctgtcttaggaacactgttgatgaatgtcacccttcgcaatcttttgaatggt |
21244813 |
T |
|
| Q |
118 |
gcaacctatgaacgtgtgtaaaaatgagtttaaattgacaaatgacacaaaccaatcatccaaatgagataaactgaccaccattaaaaacattttcatt |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21244812 |
gcaacctataaacgtgtgtaaaaatgagtttaaattgacgaatgacacaaaccaatcatccaaatgagataaactgaccaccattaaaaacagtttcatt |
21244713 |
T |
|
| Q |
218 |
caagtgtcatagtcgaaaacttgcaaaatgtgtttcttttgttgtaacttgcaagtacatggagataaaacttgttacttagctttttctcacctggtta |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21244712 |
caagtgtcatagtcaaaaacttgcaaaatgtgtttcttttgttgtaacttgcaagtgcatggagataaagcttgttacttagctttttctcacctggtta |
21244613 |
T |
|
| Q |
318 |
gcaataaacttcttaatttcttcctcggacagcgaactgttgggtaaacgaacaacataggcaattggtacctcaccagcctcatcatcaggaaatctat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21244612 |
gcaataaacttcttaatttcttcctcggacagcgaactgttgggtaaacgaacaacataggcaattggtacctcaccagcctcatcatcaggaaatctat |
21244513 |
T |
|
| Q |
418 |
tgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaataattttgatgtccatc |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21244512 |
tgaaataagtaactcaaatatgaaatattaatagagaagtatcaattgaaaaataattttgttgtccatc |
21244443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 104 - 470
Target Start/End: Complemental strand, 21260027 - 21259661
Alignment:
| Q |
104 |
atcttttgaacggtgcaacctatgaacgtgtgtaaaaatgagtttaaattgacaaatgacacaaaccaatcatccaaatgagataaactgaccaccatta |
203 |
Q |
| |
|
|||||||||| |||| ||| ||| |||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21260027 |
atcttttgaatggtgaaacttataaacgtgcgtaaaaatgagtttaatttaacgaatgacacaaaccaatcatccaaatgagataaactgaccaccatta |
21259928 |
T |
|
| Q |
204 |
aaaacattttcattcaagtgtcatagtcgaaaacttgcaaaatgtgtttcttttgttgtaacttgcaagtacatggagataaaacttgttacttagcttt |
303 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
21259927 |
aaaacagtttcattcaagtgtcatagtttaaaacttgcaaaatgtgtttcttttgttgtaacttgtaagtgcattgagataaaccttgttacttagcttt |
21259828 |
T |
|
| Q |
304 |
ttctcacctggttagcaataaacttcttaatttcttcctcggacagcgaactgttgggtaaacgaacaacataggcaattggtacctcaccagcctcatc |
403 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21259827 |
ttttcacctggttagcaataaacttcttaatttcttcctcggacagcgaactattgggtgaacgaacaacataggcaattgaaacctcaccagcctcatc |
21259728 |
T |
|
| Q |
404 |
atcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaa |
470 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| || | ||||| |||| || |||||||||||||| |
|
|
| T |
21259727 |
atcaggaaatctatagcaataagtaactcaaatgtgtattattaatagaaaaatatcaattgaaaaa |
21259661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 40805823 - 40805929
Alignment:
| Q |
18 |
ggatcgtgcttttgcaataagctctcttctgagaatttttcctgaagctgttttcggaacattttttatgaatgtcacccttcgcaatcttttgaacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||| | || || |||||||||||||||| ||||||||| ||| |
|
|
| T |
40805823 |
ggatcgtgctttgtcaataagctctcttctcagaatttttcctgatgctgtttttggaacagtgttgataaatgtcacccttcgcagtcttttgaaaggt |
40805922 |
T |
|
| Q |
118 |
gcaacct |
124 |
Q |
| |
|
|| |||| |
|
|
| T |
40805923 |
gctacct |
40805929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University