View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8122_low_22 (Length: 203)
Name: NF8122_low_22
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8122_low_22 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 43686442 - 43686268
Alignment:
| Q |
18 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgtttttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43686442 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgttcttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
43686343 |
T |
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| Q |
118 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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| T |
43686342 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
43686268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 43713766 - 43713592
Alignment:
| Q |
18 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgtttttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
117 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43713766 |
aaaattcaggagatgttttaggtggcaatgaaagttttctgtttttataggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
43713667 |
T |
|
| Q |
118 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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| T |
43713666 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
43713592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 43702942 - 43702768
Alignment:
| Q |
18 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgtttttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
117 |
Q |
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|||||||||| |||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| ||||| | |
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| T |
43702942 |
aaaattcaggagaggttttaggtggcaatggaagttttctgttcttgtaggcagcaacagatacttgtgcaaaaccagtgaataagctggttttttgttt |
43702843 |
T |
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| Q |
118 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
43702842 |
aattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaa |
43702768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 43727668 - 43727494
Alignment:
| Q |
18 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgtttttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
117 |
Q |
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|||||| ||||||| | || ||||| ||| |||||||||||| ||| | |||||| || ||||||||||||||||| | |||||||||||||| ||| |
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| T |
43727668 |
aaaattgaggtgagttcttaggtggtaattgaagttttctgttcttataagcagcagtagtgacttgtgcaaaaccagtaatcaagctggttctttttgt |
43727569 |
T |
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| Q |
118 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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|| || |||||||| ||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
43727568 |
gatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaa |
43727494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 24254 - 24428
Alignment:
| Q |
18 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgtttttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
117 |
Q |
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|||||| |||||| |||| || || |||| |||||||||||| ||| ||| |||||||| |||||| ||||||| || || |||| ||||||||| | |
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| T |
24254 |
aaaattgaggtgaatttttaggcggtaatgtaagttttctgttgttacaggaagcaacagttacttgcgcaaaactagcgaacaagttggttcttttttg |
24353 |
T |
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| Q |
118 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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||| || |||||||| ||||||||||||||||| || | ||||||| || |||||||||||||||||| ||||| |
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| T |
24354 |
aatctttacataaagaggagaagcaagaaagaataacaatgtggataaaaacatgagtgctgctggaactccaaa |
24428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 2689935 - 2689868
Alignment:
| Q |
125 |
acataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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||||||||||||||||||||||| || |||| |||||| | | ||| |||||||||||||||||||| |
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| T |
2689935 |
acataaagtggagaagcaagaaaaaagaagaaagtggaaaagaacataagtgctgctggaacaccaaa |
2689868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 25273468 - 25273294
Alignment:
| Q |
18 |
aaaattcaggtgaggttttcggtggcaatgaaagttttctgtttttaaaggcagcaacagatacttgtgcaaaaccagtgagcaagctggttctttgtgt |
117 |
Q |
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|||||| |||||| |||| || || |||| |||||||| ||| || ||| |||||| |||||| |||||| || || |||| ||||||||| | |
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| T |
25273468 |
aaaattgaggtgaatttttaggcggtaatggaagttttcggttgctataggaagcaacgattacttgcccaaaactagcgaacaagttggttcttttttg |
25273369 |
T |
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| Q |
118 |
aattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaa |
192 |
Q |
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||| || |||||||| ||||||||||||||||| || | ||||| | || |||||||||||||||||| ||||| |
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| T |
25273368 |
aatctttacataaagaggagaagcaagaaagaataacagtgtggacaaaaacatgagtgctgctggaactccaaa |
25273294 |
T |
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