View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8122_low_4 (Length: 416)

Name: NF8122_low_4
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8122_low_4
NF8122_low_4
[»] chr5 (9 HSPs)
chr5 (78-280)||(30240673-30240871)
chr5 (10-180)||(30437358-30437528)
chr5 (290-396)||(30437544-30437649)
chr5 (149-280)||(30751353-30751483)
chr5 (78-218)||(29854939-29855073)
chr5 (149-279)||(30675560-30675690)
chr5 (239-276)||(29873947-29873984)
chr5 (149-206)||(30062078-30062135)
chr5 (78-218)||(30711763-30711899)
[»] chr7 (1 HSPs)
chr7 (10-211)||(26708877-26709078)
[»] chr4 (2 HSPs)
chr4 (200-280)||(20294864-20294938)
chr4 (316-344)||(38998269-38998297)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 78 - 280
Target Start/End: Complemental strand, 30240871 - 30240673
Alignment:
Q  78 gagttgaaaagataagaaaaatgagaaattggttt-agattgaaagagcgttgaa-gtaaacagaatgaagaactttgaaaataaatgcaacggtagtag 175  Q
    |||||||||||||||| ||| |||||||||||||| |||||||  ||| ||| || ||||||||||||||||||||||| ||||||||||| ||||||||    
T  30240871 gagttgaaaagataagtaaa-tgagaaattggttttagattgactgagtgttaaaagtaaacagaatgaagaactttgagaataaatgcaatggtagtag 30240773  T
Q  176 gaagtcggcaaataggtgatcaataattgtgagcaaacattcaagtaggcgtggcgaatttttaaccacaaatttatgcaacttgcttgcaaggttccat 275  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |     |||||||||||||||||||||||||||||||||||||||||||    
T  30240772 gaagtcggcaactaggtgatcaataattgtgagcaaacattcaagtaggcat-----atttttaaccacaaatttatgcaacttgcttgcaaggttccat 30240678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 30437358 - 30437528
Alignment:
Q  10 gaagcagagagatcaaattctcaaacacaactccaagaaagggatcagccattttttgagnnnnnnnngagttgaaaagataagaaaaatgagaaattgg 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  30437358 gaagcagagatatcaaattctcaaacacaactccaagaaagggatcagccattttttgagaaaaaaaagagttgaaaagataagaaaaatgagaaattgg 30437457  T
Q  110 tttagattgaaagagcgttgaagtaaacagaatgaagaactttgaaaataaatgcaacggtagtaggaagt 180  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30437458 tttagattgaaagagtaatgaagtaaacagaatgaagaactttgaaaataaatgcaatggtagtagaaagt 30437528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 30437544 - 30437649
Alignment:
Q  290 agtagtaatttttaaaataaatgatttggaggaagcttcaatgtacgtttacctcttaatatnnnnnnntaatagaaaaaattcacttcaacatgtcgta 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||    
T  30437544 agtagtaatttttaaaataaatgatttggaggaagcttcaatgtacgtttacctcttaatataaaaaaataatagaaaaaattcacttcaacatg-cgta 30437642  T
Q  390 atccata 396  Q
    |||||||    
T  30437643 atccata 30437649  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 30751353 - 30751483
Alignment:
Q  149 ctttgaaaataaatgcaacggtagtaggaagtcggcaaataggtgatcaataattgtgagcaaacattcaagtaggcgt-ggcgaatttttaaccacaaa 247  Q
    |||||| |||||| |||| ||||||||||| || |||| |||||| |||||||||||||||||||||||| |||  ||| |||| ||||| ||||||| |    
T  30751353 ctttgagaataaaagcaatggtagtaggaactcagcaagtaggtgttcaataattgtgagcaaacattcacgta--cgtaggcgtattttcaaccacaga 30751450  T
Q  248 tttatgcaacttgcttgcaaggttccattatta 280  Q
    |||||||||||||||||||||||||||||||||    
T  30751451 tttatgcaacttgcttgcaaggttccattatta 30751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 29854939 - 29855073
Alignment:
Q  78 gagttgaaaagataagaaaaatgagaaattggtttagattgaaagagcgttgaagtaaacagaatgaagaactttgaaaataaatgcaacggtagtagga 177  Q
    |||||||||| ||||| ||| | |||||||||||||||||||||||| |||||||||||||    |||||||||||| ||||||||||| |||||| | |    
T  29854939 gagttgaaaatataagtaaa-taagaaattggtttagattgaaagagtgttgaagtaaaca----gaagaactttgagaataaatgcaatggtagttgca 29855033  T
Q  178 agtcggcaaataggtgatcaataattgtgagcaaacattca 218  Q
    ||   |||| | |||  |||||||||| |||||||||||||    
T  29855034 agaatgcaagt-ggtattcaataattgcgagcaaacattca 29855073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 279
Target Start/End: Complemental strand, 30675690 - 30675560
Alignment:
Q  149 ctttgaaaataaatgcaacggtagtaggaagtcggcaaa-tagg-tgatcaataattgtgagcaaacattcaagtaggcgtggcgaatttttaaccacaa 246  Q
    |||||| ||||||||||| |  ||||| ||||| ||||| |||| || ||||||||||||||||||| |||| || ||    ||  ||||| ||||||||    
T  30675690 ctttgagaataaatgcaatgaaagtagaaagtcagcaaagtagggtggtcaataattgtgagcaaacgttcacgtgggac--gcacattttcaaccacaa 30675593  T
Q  247 atttatgcaacttgcttgcaaggttccattatt 279  Q
     ||||||||||||||||||||||||||||||||    
T  30675592 gtttatgcaacttgcttgcaaggttccattatt 30675560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 29873947 - 29873984
Alignment:
Q  239 aaccacaaatttatgcaacttgcttgcaaggttccatt 276  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29873947 aaccacaaatttatgcaacttgcttgcaaggttccatt 29873984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 30062078 - 30062135
Alignment:
Q  149 ctttgaaaataaatgcaacggtagtaggaagtcggcaaataggtgatcaataattgtg 206  Q
    |||||| ||||||||||| ||||||||||| || |||| |||||| ||||||||||||    
T  30062078 ctttgagaataaatgcaatggtagtaggaactcagcaagtaggtgttcaataattgtg 30062135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 30711899 - 30711763
Alignment:
Q  78 gagttgaaaagataagaaaaatgagaaattggtttagattgaaagagcgttgaagtaaacagaatgaagaactttgaaaataaatgcaacggtagtagga 177  Q
    |||||||||||||||||| | ||||||||| |||||||| ||| ||| | ||||  || |    || ||| |||||||||||||||||| |  ||||| |    
T  30711899 gagttgaaaagataagaaga-tgagaaattagtttagatagaatgagtgctgaaccaagc----tggagacctttgaaaataaatgcaatgaaagtagaa 30711805  T
Q  178 agtcggcaaa-taggtgatcaataattgtgagcaaacattca 218  Q
    |||| | ||| |||||| ||||||||||||||||||| ||||    
T  30711804 agtcagaaaagtaggtggtcaataattgtgagcaaacgttca 30711763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 26708877 - 26709078
Alignment:
Q  10 gaagcagagagatcaaattctcaaacacaactccaagaaagggatcagccattttttgagnnnnnnnngagttgaaaagataagaaaaatgagaaattgg 109  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||        |||| ||||| |||| || | ||| |||||||    
T  26708877 gaagcagagacatcaaattctcgaacacaactccaagaaagggatcggccattctttgagaaaggaaagagtcgaaaatataacaaga-tgataaattgg 26708975  T
Q  110 tttagattgaaagagcgttgaagtaaacagaatgaagaactttgaaaat-aaatgcaacggtagtaggaagtcggcaaataggtgatcaataattgtgag 208  Q
    |||||| |||| ||| ||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |||| ||| || ||||||||||||||    
T  26708976 tttagagtgaacgagtgttaaagtaaacagaatgaagaactttgagaataaaatgcaatggtagtaggaagtcagcaagtagttgttcaataattgtgag 26709075  T
Q  209 caa 211  Q
    |||    
T  26709076 caa 26709078  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 20294938 - 20294864
Alignment:
Q  200 aattgtgagcaaacattcaagtaggcgtggcgaatttttaaccacaaatttatgcaacttgcttgcaaggttccattatta 280  Q
    ||||||||||||||||||| ||||      || ||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  20294938 aattgtgagcaaacattcacgtag------cgtattttcaaccacaaatttatgcaacttgcttgccacgttccattatta 20294864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 38998297 - 38998269
Alignment:
Q  316 tggaggaagcttcaatgtacgtttacctc 344  Q
    |||||||||||||||||||||||||||||    
T  38998297 tggaggaagcttcaatgtacgtttacctc 38998269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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