View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8122_low_5 (Length: 385)
Name: NF8122_low_5
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8122_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 73 - 370
Target Start/End: Complemental strand, 45343155 - 45342858
Alignment:
| Q |
73 |
tccaatggcaatttacagtgaccatttgtttcttactttttgtagtgtatgcattttgatttcaaaatataatggtgaaacttatattcatatattgata |
172 |
Q |
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| T |
45343155 |
tccaatggcaatttacagtaaccatttgtttcttaccttttgtagtgtatgcattttgatttcaaaatataatggtgaaacttatattcatatattgata |
45343056 |
T |
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| Q |
173 |
aggggagatcttttcttaagttttgtcaaattacctaaaattagatttcttttaacagtgatatttttcatcaaaatttactttcttctcaatgtttctc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45343055 |
aggggagatcttttcttaagttttgtcaaattacctaaaattagatttcttttaacagtgatatttttcatcaaaatttactttcttctcaatgtttctc |
45342956 |
T |
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| Q |
273 |
atacgagattgtcatatctgttgaaagtggtgcaattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatg |
370 |
Q |
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| T |
45342955 |
gtacgagattgtcatatctgttgaaagtggtgcaattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatg |
45342858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 45349799 - 45349738
Alignment:
| Q |
18 |
acatcagaatcagattgcatcagattcaaacaagactcaacaatccaaacatgactccaatg |
79 |
Q |
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| T |
45349799 |
acatcagaatcagattgcagcagattcaaacaagactcaacaatccaaacatgaccccaatg |
45349738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 45359278 - 45359217
Alignment:
| Q |
18 |
acatcagaatcagattgcatcagattcaaacaagactcaacaatccaaacatgactccaatg |
79 |
Q |
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| T |
45359278 |
acatcagaatcagattgcagcagattcaaacaagactcaacaatccaaacatgaccccaatg |
45359217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 48843634 - 48843564
Alignment:
| Q |
301 |
ggtgcaattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatgt |
371 |
Q |
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|||| ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
48843634 |
ggtgaaattggagaaattgttggtggtacaatgctacctgcacttgtggataagttgatagagttggatgt |
48843564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 48854737 - 48854814
Alignment:
| Q |
103 |
tcttactttttgtagtgtatgcattttgatttcaaaatataatggtgaaacttatattcatatattgataaggggagatctt |
184 |
Q |
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| T |
48854737 |
tcttactttttgtagt--atgcattttgattgcaaagtgtaatggtgaaacttat--tcatatattgataaggggagatctt |
48854814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 48855585 - 48855651
Alignment:
| Q |
293 |
ttgaaagtggtgcaattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgat |
359 |
Q |
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| T |
48855585 |
ttgaaggtggtgcagttggagaagctgttggtggtacaatgctacctgaacttgtggataagttgat |
48855651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 35648899 - 35648833
Alignment:
| Q |
305 |
caattggagaaattcttgatggtacaatgctacctgcacttgtggataatttgatcgagttggatgt |
371 |
Q |
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|||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
35648899 |
caattggagaaattgttggtggtacaatgctacctgcaattgtggataagttgatagagttggatgt |
35648833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 35649014 - 35648924
Alignment:
| Q |
206 |
cctaaaattagatttcttttaacagtgatatttttcatcaaaatttactttcttctcaatgtttctcatacgagattgtcatatctgttgaaa |
298 |
Q |
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||||||| |||||||||| |||||| ||||||||| ||||||||||||| | ||| ||||| ||| || ||||||||||| | |||||||| |
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| T |
35649014 |
cctaaaactagatttcttc-aacagttatatttttcctcaaaatttacttgcctct-tatgttgctcgtaggagattgtcatgtatgttgaaa |
35648924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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