View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8122_low_7 (Length: 346)

Name: NF8122_low_7
Description: NF8122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8122_low_7
NF8122_low_7
[»] chr6 (2 HSPs)
chr6 (18-161)||(9393521-9393664)
chr6 (53-231)||(29410570-29410737)
[»] chr7 (4 HSPs)
chr7 (49-224)||(7210971-7211143)
chr7 (52-224)||(21570658-21570827)
chr7 (51-220)||(19200750-19200916)
chr7 (147-224)||(18348273-18348347)
[»] chr2 (5 HSPs)
chr2 (49-215)||(17979103-17979268)
chr2 (54-229)||(39526041-39526214)
chr2 (270-330)||(45391828-45391888)
chr2 (270-317)||(27750714-27750761)
chr2 (116-225)||(7676150-7676257)
[»] chr4 (3 HSPs)
chr4 (78-231)||(17247836-17247985)
chr4 (78-231)||(32671607-32671758)
chr4 (115-221)||(11420564-11420666)
[»] chr3 (3 HSPs)
chr3 (115-226)||(2872460-2872568)
chr3 (270-330)||(21025067-21025127)
chr3 (270-319)||(52737829-52737878)
[»] chr8 (3 HSPs)
chr8 (49-131)||(25114893-25114975)
chr8 (270-332)||(29907945-29908007)
chr8 (270-317)||(5690848-5690896)
[»] chr1 (3 HSPs)
chr1 (270-332)||(29849987-29850049)
chr1 (270-320)||(26231118-26231168)
chr1 (279-332)||(26231336-26231389)
[»] chr5 (1 HSPs)
chr5 (271-308)||(4730704-4730741)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 9393521 - 9393664
Alignment:
Q  18 ccttttgattgtggagcctctttgtatagcatagccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaa 117  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9393521 ccttttgattgtagagcctctttgtataacatagccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaa 9393620  T
Q  118 ctttcatattcaaatattcaaagatcaaatatcattttctcaca 161  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  9393621 ctttcatattcaaatattcaaagatcaaatatcactttcccaca 9393664  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 29410737 - 29410570
Alignment:
Q  53 cttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaatatcat 152  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||  |  ||||||||||||||||| ||  |||||||||||||||     
T  29410737 cttgcttcatggacattttctaaagcctctataaatatatttcagatcaatacaacaacaaccaactttcatattcaaaaatctaaagatcaaatatcac 29410638  T
Q  153 tttctcacaaacactttcaaacttcca-ttttgtgaaaccttgataattatattttcatatccataaaggtttctaagca 231  Q
    ||        | ||||||||||||||| ||||||||| | |||   |||||||||||||||||| |||||||||||||||    
T  29410637 tt--------aaactttcaaacttccatttttgtgaagctttg---attatattttcatatcca-aaaggtttctaagca 29410570  T

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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 7210971 - 7211143
Alignment:
Q  49 tagccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaata 148  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||| | |||||||||||||||||||||| ||||||||||||    
T  7210971 tagcattgcttcatggacattttctaaagcctctataaatatatttcagttcaatacaacattaaacaactttcatattcaaatatttaaagatcaaata 7211070  T
Q  149 tcattttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatccataaaggttt 224  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||   |||||||||||||||||| || |||||    
T  7211071 tcattttctttcaaaaactttcaaacttccattttgtgaaaccttg---attatattttcatatccaaaagggttt 7211143  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 21570827 - 21570658
Alignment:
Q  52 ccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaatatca 151  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | ||||||| || |  |  ||||||||||||||||  | || ||||| ||||||||    
T  21570827 ccttgcttcatggacattttctaaagcctctataaatatgtttcatatcaataaaaaaacaaccaactttcatattcaagaaatctaagattaaatatca 21570728  T
Q  152 ttttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatccataaaggttt 224  Q
     ||||||||||| ||||||||| |||||||||||| |||||||    ||||||||||||||||| ||||||||    
T  21570727 ctttctcacaaaaactttcaaatttccattttgtggaaccttg---tttatattttcatatccaaaaaggttt 21570658  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 19200750 - 19200916
Alignment:
Q  51 gccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaatatc 150  Q
    |||||||||| || || ||||||||| ||||||||||||||||| ||||||||||||||| |  ||||||||||||||||  | |  |||||||||||||    
T  19200750 gccttgcttcatgcacgttttctaaatcctctataaatatgtttcagatcaatacaacataaaccaactttcatattcaagaaatgtaagatcaaatatc 19200849  T
Q  151 attttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatccataaag 220  Q
    | |||| |||  | ||||||||||||| ||||| ||||||||   |||||||||||||||||||| ||||    
T  19200850 actttcgcacttaaactttcaaacttcaattttatgaaacct---taattatattttcatatccaaaaag 19200916  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 18348273 - 18348347
Alignment:
Q  147 tatcattttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatccataaaggttt 224  Q
    ||||| |||||||| || ||||||||||||||||||||| ||| ||||   |||||||||||||||||||||||||||    
T  18348273 tatcactttctcacgaaaactttcaaacttccattttgtaaaatcttg---attatattttcatatccataaaggttt 18348347  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 17979268 - 17979103
Alignment:
Q  49 tagccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaata 148  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |  ||| ||||||||||||||||||||| ||||||||    
T  17979268 tagccttgcttcgtggacattttctaaagcctctataaatatattttagatcaacacaacattaaccaaatttcatattcaaatattcaaaaatcaaata 17979169  T
Q  149 tcattttctcac--aaacactttcaaacttccattttgtgaaaccttgataattatattttcatatcca 215  Q
    ||| ||||||||  ||| ||||||||||||| ||||||||||||||||   ||||||||||||||||||    
T  17979168 tcactttctcacaaaaaaactttcaaacttctattttgtgaaaccttg---attatattttcatatcca 17979103  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 39526214 - 39526041
Alignment:
Q  54 ttgcttcgtggacattttctaaagcctctataaatatgttta-agatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaatatcat 152  Q
    ||||||| ||||||||||||||||||||||||||||| |||  | ||||||||||||| |   |||||||||||||||  | |||||||||||||||||     
T  39526214 ttgcttcatggacattttctaaagcctctataaatatattttcatatcaatacaacatcaagaaactttcatattcaagaaatcaaagatcaaatatcac 39526115  T
Q  153 tttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatccataaaggtttctaag 229  Q
    ||| ||||||| || |||||||||| ||||||||||||||||   |||||||||||||||||| || ||||||||||    
T  39526114 tttatcacaaaaacgttcaaacttcaattttgtgaaaccttg---attatattttcatatccaaaatggtttctaag 39526041  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 45391828 - 45391888
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaactaatatattgat 330  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||    
T  45391828 tgttatgaaacatggcatccatggatgaaggagagaaaaactatgaaaatattgtattgat 45391888  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 27750714 - 27750761
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaa 317  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  27750714 tgttatgaaacatggcatccatggatgaacgagagaaaaactatgaaa 27750761  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 7676150 - 7676257
Alignment:
Q  116 aactttcatattcaaatattcaaagatcaaatatcattttctcacaaacactttcaaacttcca-ttttgtgaaaccttgataattatattttcatatcc 214  Q
    ||||| |||||| ||| | || |||||||||||||| ||| || |  | ||||||||||||||| |||||| ||||||   | |||||||||||||||||    
T  7676150 aacttgcatattaaaaaaatctaagatcaaatatcactttttcgcttaaactttcaaacttccatttttgtaaaacct---ttattatattttcatatcc 7676246  T
Q  215 ataaaggtttc 225  Q
    | ||| |||||    
T  7676247 aaaaaagtttc 7676257  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 17247985 - 17247836
Alignment:
Q  78 cctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaatatcattttctcacaaacactttcaaacttc 177  Q
    ||||||||||||||||| ||||| | |||| || |  ||||||| |||||||||||| | |||||||||||||||||||||||  | ||||||||| |||    
T  17247985 cctctataaatatgtttcagatcgaaacaatattaaccaactttaatattcaaatatcctaagatcaaatatcattttctcacttaaactttcaaatttc 17247886  T
Q  178 cattttgtgaaaccttgataattatattttcatatccataaaggtttctaagca 231  Q
    | ||||||||||||||    |||||||||||||||||| |||||||| ||||||    
T  17247885 cgttttgtgaaacctt----attatattttcatatccaaaaaggtttttaagca 17247836  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 32671607 - 32671758
Alignment:
Q  78 cctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaatattcaaagatcaaatatcattttctcacaaacactttcaaacttc 177  Q
    ||||||||||||  ||| | ||| | ||||||| |  |||||||||||||||||||||| |||||||||||||| ||||||||  | |||||  |||||     
T  32671607 cctctataaatacatttgacatctaaacaacattaagcaactttcatattcaaatattctaagatcaaatatcactttctcacttaaacttttgaacttt 32671706  T
Q  178 ca-ttttgtgaaaccttgataattatattttcatatccataaaggtttctaagca 231  Q
    || |||||||||||||||   ||||||| |||||||||| |||| ||||| ||||    
T  32671707 catttttgtgaaaccttg---attatatcttcatatccaaaaagatttctgagca 32671758  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 11420666 - 11420564
Alignment:
Q  115 caactttcatattcaaatattcaaagatcaaatatcattttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatcc 214  Q
    ||||||||| ||||||| | || |||||| ||  ||||||||||||  | |||||||||||| |||||| || |||||||   |||||||||||||||||    
T  11420666 caactttcaaattcaaaaagtctaagatcgaacgtcattttctcacttaaactttcaaacttacatttt-tgtaaccttg---attatattttcatatcc 11420571  T
Q  215 ataaagg 221  Q
    | |||||    
T  11420570 aaaaagg 11420564  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 2872568 - 2872460
Alignment:
Q  115 caactttcatattcaaatattcaaagatcaaatatcattttctcacaaacactttcaaacttccattttgtgaaaccttgataattatattttcatatcc 214  Q
    ||||||||||||||||  | || |||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||   |||||||||||||||||||    
T  2872568 caactttcatattcaagaaatctaagatcaaatatcactttctaacaaaaactttcaaacttcaattttgtgaaacct---taattatattttcatatcc 2872472  T
Q  215 ataaaggtttct 226  Q
    | ||||||||||    
T  2872471 aaaaaggtttct 2872460  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 21025067 - 21025127
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaactaatatattgat 330  Q
    |||||||||||||||||| ||| ||||||||| |||||| |||||||| || |||||||||    
T  21025067 tgttatgaaacatggcattcatagatgaaggaaagaaaaactatgaaaatattatattgat 21025127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 52737829 - 52737878
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaact 319  Q
    ||||| ||||||||  ||| | ||||||||||||||||||||||||||||    
T  52737829 tgttaggaaacatgatatctaaggatgaaggagagaaaagctatgaaact 52737878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 25114975 - 25114893
Alignment:
Q  49 tagccttgcttcgtggacattttctaaagcctctataaatatgtttaagatcaatacaacatgacacaactttcatattcaaa 131  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| |  |||||| ||||||||||    
T  25114975 tagcattgcttcatggacattttctaaagcctctataaatatatttcagatcaataaaacatcaatcaacttccatattcaaa 25114893  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 29907945 - 29908007
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaactaatatattgatag 332  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||| | |||||||||    
T  29907945 tgttatgaaacatggtatccatggatgaaggagagaaaaactataaaactattgtattgatag 29908007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 5690896 - 5690848
Alignment:
Q  270 tgttatgaaacatggcatccatgg-atgaaggagagaaaagctatgaaa 317  Q
    |||||||||||||||||||||||| | ||| ||||||| ||||||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaatagctatgaaa 5690848  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 29849987 - 29850049
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaactaatatattgatag 332  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||    
T  29849987 tgttatgaaacatggcatccatggatgaaggggagaaaaactatgaaactattgtattgatag 29850049  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 26231118 - 26231168
Alignment:
Q  270 tgttatgaaacatggcatccatggatgaaggagagaaaagctatgaaacta 320  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  26231118 tgttatgaaacatggcatccatggatgaaggagagaaaaggtattaaacta 26231168  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 26231336 - 26231389
Alignment:
Q  279 acatggcatccatggatgaaggagagaaaagctatgaaactaatatattgatag 332  Q
    ||||||||||||||||||||||||||||||| |||||||| | | |||||||||    
T  26231336 acatggcatccatggatgaaggagagaaaagttatgaaacaattgtattgatag 26231389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 4730741 - 4730704
Alignment:
Q  271 gttatgaaacatggcatccatggatgaaggagagaaaa 308  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  4730741 gttaggaaacatggcatccatggatgaaggagaaaaaa 4730704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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