View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8123_high_14 (Length: 259)

Name: NF8123_high_14
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8123_high_14
NF8123_high_14
[»] chr1 (12 HSPs)
chr1 (11-179)||(5459261-5459429)
chr1 (7-163)||(24449759-24449915)
chr1 (10-161)||(46692650-46692801)
chr1 (10-163)||(5389251-5389403)
chr1 (10-140)||(31585611-31585742)
chr1 (10-163)||(41920551-41920709)
chr1 (12-148)||(6764225-6764361)
chr1 (10-96)||(30685800-30685886)
chr1 (10-100)||(24684370-24684459)
chr1 (52-159)||(7857794-7857901)
chr1 (118-175)||(6804747-6804804)
chr1 (119-163)||(30685753-30685797)
[»] chr5 (6 HSPs)
chr5 (10-163)||(18593342-18593495)
chr5 (11-163)||(698461-698613)
chr5 (17-163)||(34378204-34378350)
chr5 (39-159)||(7161849-7161969)
chr5 (10-163)||(29087581-29087731)
chr5 (20-161)||(18313474-18313614)
[»] chr2 (8 HSPs)
chr2 (14-163)||(10524203-10524352)
chr2 (10-162)||(39338695-39338847)
chr2 (18-163)||(17116708-17116854)
chr2 (7-157)||(387271-387420)
chr2 (72-162)||(7874451-7874541)
chr2 (71-161)||(7460835-7460926)
chr2 (72-162)||(14106352-14106443)
chr2 (73-149)||(14405359-14405437)
[»] chr7 (17 HSPs)
chr7 (16-162)||(47325715-47325861)
chr7 (10-163)||(5860117-5860270)
chr7 (10-163)||(37795088-37795241)
chr7 (12-161)||(38306362-38306511)
chr7 (11-170)||(10244282-10244441)
chr7 (10-163)||(44353392-44353546)
chr7 (42-163)||(31971963-31972084)
chr7 (10-170)||(3419477-3419637)
chr7 (18-162)||(25160920-25161062)
chr7 (41-161)||(3867246-3867366)
chr7 (10-139)||(33435209-33435337)
chr7 (10-162)||(41089579-41089729)
chr7 (10-162)||(34390062-34390213)
chr7 (74-170)||(3419218-3419314)
chr7 (104-163)||(40726334-40726392)
chr7 (39-160)||(35745654-35745779)
chr7 (73-162)||(6585043-6585133)
[»] chr8 (15 HSPs)
chr8 (19-163)||(24995223-24995368)
chr8 (10-162)||(31207192-31207344)
chr8 (10-178)||(9519598-9519767)
chr8 (12-165)||(12898102-12898254)
chr8 (10-163)||(37986687-37986840)
chr8 (10-162)||(32066125-32066277)
chr8 (10-163)||(20138525-20138679)
chr8 (7-163)||(41893231-41893386)
chr8 (10-162)||(34388836-34388987)
chr8 (18-111)||(22773606-22773699)
chr8 (10-163)||(16457304-16457443)
chr8 (16-100)||(36630943-36631026)
chr8 (111-170)||(22773815-22773874)
chr8 (35-78)||(35821378-35821421)
chr8 (130-163)||(36631043-36631076)
[»] chr3 (15 HSPs)
chr3 (10-163)||(47235797-47235950)
chr3 (10-163)||(2392335-2392488)
chr3 (10-163)||(2394099-2394252)
chr3 (10-162)||(20611882-20612033)
chr3 (10-163)||(45163954-45164107)
chr3 (16-163)||(17551062-17551204)
chr3 (18-163)||(34475585-34475728)
chr3 (18-163)||(53248007-53248153)
chr3 (18-170)||(31482991-31483142)
chr3 (19-163)||(43012484-43012627)
chr3 (7-162)||(19176599-19176755)
chr3 (10-161)||(9583886-9584034)
chr3 (10-161)||(23328181-23328331)
chr3 (72-163)||(30352270-30352359)
chr3 (39-163)||(40023401-40023525)
[»] chr6 (3 HSPs)
chr6 (11-163)||(3117593-3117745)
chr6 (46-175)||(10541967-10542096)
chr6 (55-161)||(14663221-14663327)
[»] scaffold0343 (1 HSPs)
scaffold0343 (16-170)||(5811-5965)
[»] chr4 (8 HSPs)
chr4 (10-162)||(8255126-8255278)
chr4 (10-162)||(8268544-8268696)
chr4 (10-163)||(30167394-30167546)
chr4 (7-175)||(30964537-30964701)
chr4 (7-138)||(4305821-4305951)
chr4 (75-162)||(8705974-8706061)
chr4 (107-163)||(20464786-20464842)
chr4 (11-148)||(31050505-31050641)
[»] scaffold0068 (1 HSPs)
scaffold0068 (10-162)||(35605-35754)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 5459261 - 5459429
Alignment:
Q  11 gtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttta 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  5459261 gtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagtttta 5459360  T
Q  111 ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatatttatagtgattg 179  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||    
T  5459361 ttttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattg 5459429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 24449915 - 24449759
Alignment:
Q  7 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagt 106  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  24449915 tttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaaatgcggctcagcttgggtgttggggtctaggagt 24449816  T
Q  107 tttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  24449815 tttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtggatacc 24449759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 46692801 - 46692650
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||| ||||||||||||||||| | ||||||    
T  46692801 ggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagtttt 46692702  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggata 161  Q
    |||| || ||||||||||||||||||||||| ||||||||||||||| ||||    
T  46692701 atttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgata 46692650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 5389403 - 5389251
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||| || |||||||||| ||||||||||||||||| ||||||||    
T  5389403 ggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagtttt 5389304  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||    
T  5389303 attttgagggtgttc-ttgtaagtgagtagtgacgatgggcggtggtggatacc 5389251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 31585742 - 31585611
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgtt-ggggtctaggagttt 108  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| | |||||||||| |||||||  ||||||    
T  31585742 ggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttt 31585643  T
Q  109 tattttgatggtgttctttgtgggtgagtagt 140  Q
    |||||||| |||||||||||||||||||||||    
T  31585642 tattttgagggtgttctttgtgggtgagtagt 31585611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 41920551 - 41920709
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatcct-----tcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctagga 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||     || |||||||||||||    |||||||||| ||||||||||||||||| |||    
T  41920551 ggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtggctcagcttgggtgttggggtcttgga 41920650  T
Q  105 gttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||||||||||| |||||| |||||||||||||||| ||||| |||||||||| |||||    
T  41920651 gttttattttgagggtgttttttgtgggtgagtagtgacgataggcggtggtgaatacc 41920709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 6764361 - 6764225
Alignment:
Q  12 tggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttat 111  Q
    ||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||| ||||||||||    
T  6764361 tggttcgaagggcgtgaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttat 6764262  T
Q  112 tttgatggtgttctttgtgggtgagtagtcacgatgg 148  Q
    ||| | | ||||||||||||||||||||| |||||||    
T  6764261 tttcaggatgttctttgtgggtgagtagtgacgatgg 6764225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 30685886 - 30685800
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggg 96  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||    
T  30685886 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggtgctccttgatatgtggctcagcttgggtgttggg 30685800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 24684459 - 24684370
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtct 100  Q
    ||||| ||||||||||||||||| |||  || |||||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||    
T  24684459 ggtggatcggaggtcgcgaggtt-gtggaagatgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtcggggtct 24684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 7857794 - 7857901
Alignment:
Q  52 ttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttga-tggtgttctttgtgggtgagtagtcacgatgggc 150  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||  |||| |||||||||||||||  |||||||| || |||||||||||  |||||||     
T  7857794 ttcggttaggagct-tttgaaatgtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggt 7857892  T
Q  151 ggtggtgga 159  Q
    ||| |||||    
T  7857893 ggttgtgga 7857901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 6804747 - 6804804
Alignment:
Q  118 ggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatatttatagtg 175  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||  |||||| ||||    
T  6804747 ggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtg 6804804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 30685797 - 30685753
Alignment:
Q  119 gtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggatacc 30685753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 18593342 - 18593495
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  18593342 ggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggctcaacttgggtgttggggtctgggagtttt 18593441  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||| || | ||||||||||||||||||||| ||||||||||||||||||||||    
T  18593442 atttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggatacc 18593495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 698461 - 698613
Alignment:
Q  11 gtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttta 110  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  698461 gtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaatgtggctcagcttgggtgttggggtctgagagtttta 698560  T
Q  111 ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||| || ||||||||||||||||||||||| ||||| |||| |||||||||||    
T  698561 tttggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggatacc 698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 34378204 - 34378350
Alignment:
Q  17 cggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttga 116  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| ||||||| | ||||||||||| ||||||||||||||| |  ||||||||||||||    
T  34378204 cggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctcagcttgggtgttggggtttgagagttttattttga 34378303  T
Q  117 tggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
     ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  34378304 gggtgttctttgtgggtgagtagtgacgatggacggtggtggatacc 34378350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 7161969 - 7161849
Alignment:
Q  39 agctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagta 138  Q
    ||||||||||||||| ||| ||||| |||| || |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  139 gtcacgatgggcggtggtgga 159  Q
    || ||| |||| |||||||||    
T  7161869 gtgacgttgggtggtggtgga 7161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 29087581 - 29087731
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||||||||||||  || ||||| |||||||||| ||| |||||||||| | | ||||||||||||| | ||||||||||| |||| |||    
T  29087581 ggtggatcggaggtcgcgaggtta-tggtagctccatgatcctttggtcaggtgctcttcgta-tgtggctcaacttagatgttggggtctgggagcttt 29087678  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||| ||| ||||||  ||||||||||| |||||||||||||||| |||||    
T  29087679 attttgagggt-ttctttaggggtgagtagtgacgatgggcggtggtgaatacc 29087731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 18313614 - 18313474
Alignment:
Q  20 aggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatgg 119  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |  |||||| || || | | |||||||| | || | ||    
T  18313614 aggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttaggattttggagtttt-tctttaggg 18313516  T
Q  120 tgttctttgtgggtgagtagtcacgatgggcggtggtggata 161  Q
    |||||||  |||||||||||| |||||| | |||| ||||||    
T  18313515 tgttcttcatgggtgagtagtgacgatgagtggtgatggata 18313474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 10524203 - 10524352
Alignment:
Q  14 gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| | ||||||||||||    
T  10524203 gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagttttattt 10524302  T
Q  114 tgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
     || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10524303 ggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggatacc 10524352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 39338847 - 39338695
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| ||||||||||| ||||| ||||||||    
T  39338847 ggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagtttt 39338748  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  39338747 attttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 39338695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 17116854 - 17116708
Alignment:
Q  18 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggag-ttttattttga 116  Q
    |||||||||||||||||||||| || | |||||| |||||||||||||||| | ||||||||||| |||||||||||||||||  ||| |||||||||||    
T  17116854 ggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtggctcagcttgggtgttggggtctgagagtttttattttga 17116755  T
Q  117 tggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
     ||||||||||||||||||||| | ||||||||||||||||||||||    
T  17116754 gggtgttctttgtgggtgagtaatgacgatgggcggtggtggatacc 17116708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 387271 - 387420
Alignment:
Q  7 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagt 106  Q
    |||||||| ||||||||| ||||||||  || ||||||||| || ||| || |||||||||| || | |||||||| ||||||||||||||||| |||||    
T  387271 tttggtggatcggaggtcacgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctgggagt 387369  T
Q  107 tttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtg 157  Q
    |||||||||| ||||||||||| |||||| |||| ||||||||||||||||    
T  387370 tttattttgagggtgttctttgggggtgaatagtgacgatgggcggtggtg 387420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 7874451 - 7874541
Alignment:
Q  72 aatgtggctcaacttgggtgttggggtctaggagttttattttgatgg-tgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||||||| |||||||||||  |||| ||||||||||||||| || ||||||||| ||||||||||| |||||||| ||| ||||||||    
T  7874451 aatgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttctttg-gggtgagtagtgacgatgggtggttgtggatac 7874541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 7460835 - 7460926
Alignment:
Q  71 aaatgtggctcaacttgggtgttggggtctaggagttttattttga-tggtgttctttgtgggtgagtagtcacgatgggcggtggtggata 161  Q
    |||||||||||| |||||||||||  |||| |||||||||||||||  ||||||||||| || |||||||| |||||| | ||| |||||||    
T  7460835 aaatgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggata 7460926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 14106443 - 14106352
Alignment:
Q  72 aatgtggctcaacttgggtgttggggtctaggagttttattttgatgg-tgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||||||| |||||||||||  ||||  |||||||||||||| || ||||||||| ||||||||||| |||||| | ||| ||||||||    
T  14106443 aatgtggctcagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatac 14106352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 14405359 - 14405437
Alignment:
Q  73 atgtggctcaacttgggtgttggggtctaggagttttattttgatgg-tgttc-tttgtgggtgagtagtcacgatggg 149  Q
    ||||||||| ||||||||||||  |||| ||||||||||||||| || ||||| |||| ||||||||||| || |||||    
T  14405359 atgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgacaatggg 14405437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 47325861 - 47325715
Alignment:
Q  16 tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttg 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  47325861 tcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttg 47325762  T
Q  116 atggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    | ||||||||||||||||||||||| |||||||||| || |||||||    
T  47325761 agggtgttctttgtgggtgagtagtgacgatgggcgatgatggatac 47325715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 5860270 - 5860117
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  5860270 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagtttt 5860171  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||| | |||||||||||||| |||||||| |||||||||  ||||| |||||    
T  5860170 attttcagggtgttctttgtggatgagtagtgacgatgggcaatggtgaatacc 5860117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 37795088 - 37795241
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |  |||||||    
T  37795088 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgagagtttt 37795187  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||| |||||||||||||| | |||||| | ||||||||||||||||||||    
T  37795188 attttgagggtgttctttgtggttaagtagtaatgatgggcggtggtggatacc 37795241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 38306362 - 38306511
Alignment:
Q  12 tggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| |||||||||||||||||  |||||||||    
T  38306362 tggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttat 38306461  T
Q  112 tttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggata 161  Q
    ||||| |||||||||||| |||||||||| |||||||| |||||||||||    
T  38306462 tttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggata 38306511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 10244282 - 10244441
Alignment:
Q  11 gtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttta 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||||    
T  10244282 gtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaattgtggctcagcttgggtgtttgggtctgggattttta 10244381  T
Q  111 ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatattta 170  Q
     || || |||| |||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  10244382 gttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgttta 10244441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 44353546 - 44353392
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |  ||||||||||||||||| ||||||||    
T  44353546 ggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagtttt 44353447  T
Q  110 a-ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    | |||||| |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  44353446 atttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggatacc 44353392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 31972084 - 31971963
Alignment:
Q  42 tgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagtc 141  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||     
T  31972084 tgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtg 31971985  T
Q  142 acgatgggcggtggtggatacc 163  Q
    ||||||||||||||| ||||||    
T  31971984 acgatgggcggtggttgatacc 31971963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 3419637 - 3419477
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| || |||||| | ||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||| | ||||||||    
T  3419637 ggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaattgtggcttaacttgggtgttggggtttgggagtttt 3419538  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatattta 170  Q
    ||||| | ||||||||||||| ||||||||| ||||||  |||||||||||| ||| ||||    
T  3419537 attttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgttta 3419477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 25160920 - 25161062
Alignment:
Q  18 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgat 117  Q
    ||||||| | ||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||  ||||||  |||| |     
T  25160920 ggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaaatgtggctcaacttagatgttggggtctgagagttt--ttttaaa 25161017  T
Q  118 ggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||    
T  25161018 ggtgttctttgtgggtgagtagtgacgatgggcgttggtggatac 25161062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 3867246 - 3867366
Alignment:
Q  41 ctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagt 140  Q
    ||||||||||||| ||| |||||||||| || |||||||||| |||||||||||| || | | ||||||||||||| ||||||||||| |||||||||||    
T  3867246 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagt 3867345  T
Q  141 cacgatgggcggtggtggata 161  Q
     ||||||| ||||||||||||    
T  3867346 gacgatggacggtggtggata 3867366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 33435209 - 33435337
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||| |||| |||| |||||||||||||| |||||||||| ||| ||||||||| ||||| ||||| |||||  |||||||    
T  33435209 ggtggatcggaggtcgcgaggtt-gtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgagagtttt 33435307  T
Q  110 attttgatggtgttctttgtgggtgagtag 139  Q
     |||||| ||||||||||| ||||||||||    
T  33435308 cttttgagggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 41089729 - 41089579
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||| |||  ||||||||||| ||||| | |||||||||| ||| ||| ||||||  |||||||| |||||| ||||||||    
T  41089729 ggtggatcggaggtcgcgaggtt-gtggaagctgcatgattcttcgttgaggtgctcttcgaagtgtagctcaagatgggtgttagggtctgggagtttt 41089631  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||| ||||||||||| |||| | |||| || |||||||||||| |||||    
T  41089630 attttgagggtgttctttgcgggt-aatagtgacaatgggcggtggtagatac 41089579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 34390062 - 34390213
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||||| |||||| |||  ||||||||| || |||| ||||| ||| ||| ||||||||||||||||||||||||  |||| ||||||||    
T  34390062 ggtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcgattaggagct-tttcaaatgtggctcaacttgggtgttgtagtctgggagtttt 34390159  T
Q  110 attttga-tggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    |||||||  ||||||||||| || |||||||| |||||||| ||| | ||||||    
T  34390160 attttgaggggtgttctttggggatgagtagtgacgatgggtggttgcggatac 34390213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 3419314 - 3419218
Alignment:
Q  74 tgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatattta 170  Q
    ||||||| ||||||||||||||||| | ||||||||||||| | |||||| |||||| ||||||||| | ||||  |||||||||||| ||| ||||    
T  3419314 tgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgttta 3419218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 40726392 - 40726334
Alignment:
Q  104 agttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||||||||| |||||||||||| |||||||||| | ||| ||||||||||||||||    
T  40726392 agttttattttgagggtgttctttgt-ggtgagtagtgatgataggcggtggtggatacc 40726334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 35745779 - 35745654
Alignment:
Q  39 agctgcatgatccttcggttaggtgctctttgaaat---gtggctcaacttgggtgttggggtctaggagttttattttgat-ggtgttctttgtgggtg 134  Q
    ||||||||| || |||||||||| ||| || || ||   |||||||| |||||||||||  ||||    ||||||||||||  ||||||||||| |||||    
T  35745779 agctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtgttctttgggggtg 35745680  T
Q  135 agtagtcacgatgggcggtggtggat 160  Q
    |||||| |||||||| || |||||||    
T  35745679 agtagtgacgatgggtgggggtggat 35745654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 6585043 - 6585133
Alignment:
Q  73 atgtggctcaacttgggtgttggggtctaggagttttattttga-tggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    |||||||||| |||||||||||  |||| |||||||||||||||  |||| | ||||  |||||||||| |||||| | ||| ||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatac 6585133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 24995368 - 24995223
Alignment:
Q  19 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgtt-ggggtctaggagttttattttgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||     
T  24995368 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgag 24995269  T
Q  118 ggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  24995268 ggtgttctttgtgcgtgagtagtgacgatgggcggtggtggatacc 24995223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 31207344 - 31207192
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||| || | ||||||||    
T  31207344 ggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagtttt 31207245  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  31207244 attttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 31207192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 9519598 - 9519767
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgtt-ggggtctaggagttt 108  Q
    ||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||| |||||||  ||||||    
T  9519598 ggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagttt 9519697  T
Q  109 tattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatatttatagtgatt 178  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||    
T  9519698 tattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgatt 9519767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 12898254 - 12898102
Alignment:
Q  12 tggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttat 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||  |||||||||    
T  12898254 tggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtcttagagttttat 12898156  T
Q  112 tttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccat 165  Q
    ||||| ||||||||||||||||||||||| ||||||  |||| |||||| ||||    
T  12898155 tttgagggtgttctttgtgggtgagtagtgacgatgaacggttgtggattccat 12898102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 37986840 - 37986687
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||  ||||| ||||||||    
T  37986840 ggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctgggagtttt 37986741  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||| || ||||||||||||||||||||| | |||||||| |||||| ||||||    
T  37986740 atttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagatacc 37986687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 32066277 - 32066125
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  32066277 ggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggttcagcttgggtgttggggtctgagagtttt 32066178  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    |||| || ||||||||||||| ||||||||| |||||||||||||||||||||    
T  32066177 atttggagggtgttctttgtgagtgagtagtgacgatgggcggtggtggatac 32066125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 20138525 - 20138679
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |  ||||||||||||||||| ||||||||    
T  20138525 ggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagtttt 20138624  T
Q  110 a-ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    | |||||| |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  20138625 atttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggatacc 20138679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 41893386 - 41893231
Alignment:
Q  7 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagt 106  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||  | |||| ||||| ||||||||||||| ||||||||||| ||||| |||||    
T  41893386 tttggtggttaagaggtcgcaaggtttgtgatagctgcatgatccttctat-aggtactcttcgaaatgtggctcagcttgggtgttgaggtctgggagt 41893288  T
Q  107 tttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    | |||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41893287 tctattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtggatacc 41893231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 34388987 - 34388836
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||| |||||| ||||||||||||||||   ||||||||| |||||||| ||||    |||||||||| ||||||||||||||| |  |||||||    
T  34388987 ggtggatcgtaggtcgtgaggtttgtgatagctag-tgatccttcagttaggtgttcttcatcatgtggctcagcttgggtgttggggtatgagagtttt 34388889  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  34388888 attttgagggtgttctttgtgggtgagtagtgacgataggcggtggtggatac 34388836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 22773606 - 22773699
Alignment:
Q  18 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttat 111  Q
    ||||||| |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||  |||||||||||||||| ||||||||||    
T  22773606 ggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagttttat 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 16457443 - 16457304
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||||||||| |||| |||||||||||||||||||||||| |  |||||||||||||||||||||||||||| ||||              ||||||||    
T  16457443 ggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggtgctctttgaaatgtggctcagcttg--------------ggagtttt 16457358  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||| | |||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  16457357 attttcagggtggtctttatgggtgagtagtgacgatggacggtggtggatacc 16457304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 36630943 - 36631026
Alignment:
Q  16 tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtct 100  Q
    ||||||||||||||||| |||  ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||    
T  36630943 tcggaggtcgcgaggtt-gtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtgggggtct 36631026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 22773815 - 22773874
Alignment:
Q  111 ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatattta 170  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||| ||||    
T  22773815 ttttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtggttaccatgttta 22773874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 35821378 - 35821421
Alignment:
Q  35 tgatagctgcatgatccttcggttaggtgctctttgaaatgtgg 78  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  35821378 tgatagctgcatgatccttcggttatgtgctcttagaaatgtgg 35821421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 36631043 - 36631076
Alignment:
Q  130 gggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||||||| ||||||||||||||||||||||    
T  36631043 gggtgagtagttacgatgggcggtggtggatacc 36631076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 47235797 - 47235950
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||  |||||||    
T  47235797 ggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagtttt 47235896  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  47235897 attttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggatacc 47235950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 2392488 - 2392335
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||||||||| ||||||||||||||||||||||||||    
T  2392488 ggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagtttt 2392389  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||  |||||| |||||||||||||||| ||||||||||||||||||||||    
T  2392388 attttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggatacc 2392335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 2394252 - 2394099
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||||||||| ||||||||||||||||||||||||||    
T  2394252 ggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagtttt 2394153  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||  |||||| |||||||||||||||| ||||||||||||||||||||||    
T  2394152 attttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggatacc 2394099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 20611882 - 20612033
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||    
T  20611882 ggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgtt-gggtctaggagtttt 20611980  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  20611981 attctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 20612033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 45163954 - 45164107
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  45163954 ggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagtttt 45164053  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||| |||||| ||||| ||||| |||| ||||||||||||| || |||||    
T  45164054 attttgagggtgttatttgtaggtgattagtgacgatgggcggtgatgaatacc 45164107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 17551062 - 17551204
Alignment:
Q  16 tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttg 115  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||| |||||||||||||  ||||||||||||||||  |||||||||||||    
T  17551062 tcggaggtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttg 17551156  T
Q  116 atggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    | |||||||||||| |||||||||| ||||||||||||||||| ||||    
T  17551157 agggtgttctttgtcggtgagtagtgacgatgggcggtggtggttacc 17551204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 34475728 - 34475585
Alignment:
Q  18 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgat 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| |  ||||||  |||| |     
T  34475728 ggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactcagcttaggtgttggggtatgagagttt--ttttaag 34475631  T
Q  118 ggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  34475630 ggtgttctttgtgggtgagtagtgacgatgggcggtggtggatacc 34475585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 53248007 - 53248153
Alignment:
Q  18 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggag-ttttattttga 116  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||  ||| |||||||||||    
T  53248007 ggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttattttga 53248106  T
Q  117 tggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
      |||||||||||||||||||||| ||||||||||||||||| ||||    
T  53248107 gagtgttctttgtgggtgagtagtgacgatgggcggtggtggttacc 53248153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 31482991 - 31483142
Alignment:
Q  18 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |  ||||||| |||| |     
T  31482991 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgagagtttt-ttttaag 31483089  T
Q  118 ggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatattta 170  Q
    |||||||||||||||| |||||| ||||||  | |||||||||||||| ||||    
T  31483090 ggtgttctttgtgggttagtagtgacgatgaacagtggtggataccatgttta 31483142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 43012484 - 43012627
Alignment:
Q  19 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatg 118  Q
    |||||||||||||| |||  || ||||||||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |    
T  43012484 gaggtcgcgaggtt-gtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgagg 43012582  T
Q  119 gtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||||||  ||||||||||  |||||| ||| ||||||||||    
T  43012583 gtgttctttggaggtgagtagtggcgatggacgggggtggatacc 43012627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 19176599 - 19176755
Alignment:
Q  7 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctt--cggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctagga 104  Q
    |||||||| ||||||||||| ||||| |||  |||||||||||||||  |||| |||||||||| | ||||||||||| ||||||||| ||||||| ||     
T  19176599 tttggtggatcggaggtcgcaaggtt-gtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgggt 19176697  T
Q  105 gttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||  ||||||||||||    
T  19176698 gttttattttgagggtgttctttaggggtgagtagtgacgatggatggtggtggatac 19176755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 9584034 - 9583886
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||| |||||||| |||| ||  ||| ||||||||||| ||| |||||| ||| ||||||||  ||||||| ||||||||| ||||||||    
T  9584034 ggtggatcggaggttgcgaggtt-gtga-agtcgcacgatccttcggtcaggcgctcttcgaattgtggctctgcttgggttttggggtctgggagtttt 9583937  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggata 161  Q
    ||||||| | |||||||||  |||||||||| ||||| ||||||||||||||    
T  9583936 attttgaggatgttctttg-cggtgagtagtgacgataggcggtggtggata 9583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 23328331 - 23328181
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| |||||||||| |||||| |||  |||| | || || |||||||||| ||| || ||| ||||||||| |||||||||||  |||| ||||||||    
T  23328331 ggtggatcggaggtcgagaggtt-gtggaagctccttgttcattcggttaggagcttttcgaa-tgtggctcagcttgggtgttgaagtctgggagtttt 23328234  T
Q  110 attttga-tggtgttctttgtgggtgagtagtcacgatgggcggtggtggata 161  Q
    ||||||| |||||||||||| ||||||||||| |||||||| ||| |||||||    
T  23328233 attttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggata 23328181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 30352359 - 30352270
Alignment:
Q  72 aatgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| |  |||||||||||||| |||||||| |||||||| |||||||||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagttttttttag--ggtgttctttgtggatgagtagtgacgatgggtggtggtggatacc 30352270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 40023525 - 40023401
Alignment:
Q  39 agctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttga-tggtgttctttgtgggtgagt 137  Q
    ||||||||| || |||||||||| ||| || ||| ||||||||| || ||||||||  |||| |||||||||||||||  || |||||||  || |||||    
T  40023525 agctgcatgttcattcggttaggagcttttcgaa-tgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagt 40023427  T
Q  138 agtcacgatgggcggtggtggatacc 163  Q
    ||| |||||||  ||| |||||||||    
T  40023426 agtgacgatggatggttgtggatacc 40023401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 3117593 - 3117745
Alignment:
Q  11 gtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttta 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  3117593 gtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaatgtggctcaacttgggtgttggggtctgggagtttta 3117692  T
Q  111 ttttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||  | |||||||||||||||| |||||  |||||| |||||||||| ||||    
T  3117693 tttatagggtgttctttgtgggtaagtagagacgatgagcggtggtggttacc 3117745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 10541967 - 10542096
Alignment:
Q  46 tgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagtcacga 145  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||| || ||| ||||||||||||||||||| ||||    
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  146 tgggcggtggtggataccatatttatagtg 175  Q
    |||||||||||||||||| |||||| ||||    
T  10542067 tgggcggtggtggataccgtatttaaagtg 10542096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 14663221 - 14663327
Alignment:
Q  55 ggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtg 154  Q
    |||||| || |||| ||||||||||||  ||||| ||||||||| | ||||||||||||||| | ||||||||| ||||||||||| |||||||||||||    
T  14663221 ggttagatgttcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtg 14663320  T
Q  155 gtggata 161  Q
    |||||||    
T  14663321 gtggata 14663327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 5811 - 5965
Alignment:
Q  16 tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagttttattttg 115  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||| ||||||||||||||    
T  5811 tcggaggtcgcaaggtttgtgatagctacttgatccttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttg 5910  T
Q  116 atggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatattta 170  Q
    | |||||| |||||||||||||||| | |||||| ||||||||||||||| ||||    
T  5911 agggtgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgttta 5965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 8255126 - 8255278
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||  |||||||    
T  8255126 ggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagtttt 8255225  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  8255226 attttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatac 8255278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 8268544 - 8268696
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||  |||||||    
T  8268544 ggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagtttt 8268643  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    ||||||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  8268644 attttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatac 8268696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 30167546 - 30167394
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||||| | |||||| |||||||||| |||||||||||||||||| | ||||||||    
T  30167546 ggtggtccggaggtcgcgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagtttt 30167447  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    ||||||| |||||||||||||||||||| || ||| | ||||||||||||||||    
T  30167446 attttgagggtgttctttgtgggtgagtggtgacg-ttggcggtggtggatacc 30167394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 30964537 - 30964701
Alignment:
Q  7 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |  |||||||    ||  || |||||    
T  30964537 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatgtggccctgcttgggt----ggtactgggagt 30964632  T
Q  107 tttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggataccatatttatagtg 175  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| | |||||| ||||    
T  30964633 tttattttgagggtgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtg 30964701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 4305821 - 4305951
Alignment:
Q  7 tttggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagt 106  Q
    ||||||||| | |||||||| |||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||||| || |||| | |||||    
T  4305821 tttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcg-aatgtggctcaacttgggtatttgggtttgggagt 4305919  T
Q  107 tttattttgatggtgttctttgtgggtgagta 138  Q
    |||||||| | |||| ||||||||||||||||    
T  4305920 tttattttcagggtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 8706061 - 8705974
Alignment:
Q  75 gtggctcaacttgggtgttggggtctaggagttttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatac 8705974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 20464786 - 20464842
Alignment:
Q  107 tttattttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatacc 163  Q
    |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggatacc 20464842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 31050641 - 31050505
Alignment:
Q  11 gtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttta 110  Q
    |||| |||||||||| |||||| |||  ||||||||| || |||||||||| ||| || ||  ||||||| | |||||||||||  |||| |  ||||||    
T  31050641 gtggatcggaggtcgagaggtt-gtggaagctgcatgttcattcggttaggagcttttcgat-tgtggctaagcttgggtgttgaagtctggctgtttta 31050544  T
Q  111 ttttgatgg-tgttctttgtgggtgagtagtcacgatgg 148  Q
    |||||| || ||||| ||| ||||||||||| |||||||    
T  31050543 ttttgaggggtgttccttgggggtgagtagtgacgatgg 31050505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 35754 - 35605
Alignment:
Q  10 ggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctctttgaaatgtggctcaacttgggtgttggggtctaggagtttt 109  Q
    ||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||| | ||||||||    
T  35754 ggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaaatgaggctcagcttgggtgttggggtgtgggagtttt 35655  T
Q  110 attttgatggtgttctttgtgggtgagtagtcacgatgggcggtggtggatac 162  Q
     ||| ||  |||||||| |  ||||||| || ||||||||| |||||||||||    
T  35654 ttttaga--gtgttcttagcaggtgagt-gtgacgatgggcagtggtggatac 35605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University