View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_high_5 (Length: 449)
Name: NF8123_high_5
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 48825896 - 48825485
Alignment:
| Q |
18 |
atcactctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggc |
117 |
Q |
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| T |
48825896 |
atcactctcaaaggtttacaagctattcata----aatgcgacaaagtttacatggaagcttacacttccctcctctccttcggcctctcttcaaaaggc |
48825801 |
T |
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| Q |
118 |
ctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatgttattctatctcaa---------c |
208 |
Q |
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| T |
48825800 |
ctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatgttattctatctcaagctcatcttt |
48825701 |
T |
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| Q |
209 |
ctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctccttcaacattttaattgttttgcttcagtttcttatttttg--tattct |
306 |
Q |
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| T |
48825700 |
ctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctcc--------tttaattgttttgcttcagtttcttatttctgtatattct |
48825609 |
T |
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| Q |
307 |
tcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaatgcgcatctgttttgaatgcaattg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48825608 |
tcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaat--gcatctgttttgaatgcaattg |
48825511 |
T |
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| Q |
407 |
ggatttgtggtttgcagctatatcgt |
432 |
Q |
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| T |
48825510 |
ggatttgtggtttgcagctatatcgt |
48825485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 53054289 - 53054117
Alignment:
| Q |
24 |
ctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggcctctcc |
123 |
Q |
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|||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
53054289 |
ctcaaaggtttagaagctattcaaa----aatgcgacaaggtttacatggaagcttacacttcccttctctccttcggtctctcttcacacggcctctcc |
53054194 |
T |
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| Q |
124 |
aacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatgttattct |
200 |
Q |
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| T |
53054193 |
aacctcgaaaaactatacggtaaacccattattcttgccgatagagaaatggttgaagaaaaagcggatgatattct |
53054117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 53341292 - 53341427
Alignment:
| Q |
65 |
tttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccga |
164 |
Q |
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| T |
53341292 |
tttacatggaagcttacacttcccttccctccttcggtctctcttcatacggcctctccaaccttgaaaaactatacggtaaacccattacacttgccga |
53341391 |
T |
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| Q |
165 |
tagagaaatggttgaagaaaaagttgatgttattct |
200 |
Q |
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| T |
53341392 |
tagagaaatggttgaagaaaaagcggatgatattct |
53341427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 264 - 432
Target Start/End: Complemental strand, 53054015 - 53053849
Alignment:
| Q |
264 |
aacattttaattgttttgcttcagtttcttatttttgtattcttcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattga |
363 |
Q |
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|||| ||| ||||||||||||||||| | ||||| || || ||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||| || |
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| T |
53054015 |
aacaattttattgttttgcttcagttattgattttggtgtttttcacagggctaccactcacactgaccttgttgttcgagctaagaagatgggaatcga |
53053916 |
T |
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| Q |
364 |
agtcaaaatagtgcacaatgcgcatctgttttgaatgcaattgggatttgtggtttgcagctatatcgt |
432 |
Q |
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| T |
53053915 |
agtcaaagttgtgcacaat--gcatctgtcatgaatgcaattgggatttgtggtttgcagctatatcgt |
53053849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 414
Target Start/End: Original strand, 53341596 - 53341688
Alignment:
| Q |
320 |
actcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaatgcgcatctgttttgaatgcaattgggatttgt |
414 |
Q |
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|||||||||| |||||||||||||| ||||| |||||||| ||||||||| | ||||||||| |||||||| |||||||||||||||||||| |
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| T |
53341596 |
actcacactgaccttgttgttcgagctaagaagatgggaatcgaagtcaaagttgtgcacaat--gcatctgtcatgaatgcaattgggatttgt |
53341688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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