View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8123_high_9 (Length: 358)

Name: NF8123_high_9
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8123_high_9
NF8123_high_9
[»] chr6 (7 HSPs)
chr6 (14-341)||(14319592-14319918)
chr6 (219-334)||(34992157-34992267)
chr6 (219-317)||(10163463-10163557)
chr6 (219-329)||(24154357-24154463)
chr6 (220-334)||(28712178-28712288)
chr6 (254-331)||(242231-242308)
chr6 (236-334)||(6038783-6038877)
[»] chr8 (11 HSPs)
chr8 (219-331)||(18847228-18847336)
chr8 (228-334)||(22455300-22455402)
chr8 (265-334)||(5892430-5892499)
chr8 (219-329)||(15341111-15341217)
chr8 (219-329)||(15430176-15430282)
chr8 (219-329)||(15521480-15521586)
chr8 (254-334)||(28862662-28862742)
chr8 (219-334)||(22450255-22450366)
chr8 (268-334)||(28291766-28291832)
chr8 (254-334)||(32352009-32352089)
chr8 (254-334)||(32368670-32368750)
[»] chr7 (6 HSPs)
chr7 (40-183)||(10292313-10292457)
chr7 (184-334)||(28036931-28037077)
chr7 (219-334)||(11994123-11994233)
chr7 (254-335)||(9022736-9022817)
chr7 (48-107)||(10258843-10258902)
chr7 (219-252)||(18084096-18084129)
[»] chr3 (10 HSPs)
chr3 (219-334)||(15987374-15987485)
chr3 (219-334)||(14132283-14132394)
chr3 (219-328)||(45280154-45280259)
chr3 (219-334)||(44451072-44451182)
chr3 (222-334)||(4022926-4023034)
chr3 (219-334)||(53589309-53589421)
chr3 (219-334)||(1744883-1744994)
chr3 (215-341)||(9101834-9101957)
chr3 (219-319)||(25466277-25466373)
chr3 (215-291)||(48895836-48895908)
[»] chr5 (4 HSPs)
chr5 (184-334)||(10235814-10235959)
chr5 (219-334)||(9422907-9423017)
chr5 (219-331)||(28619441-28619549)
chr5 (222-334)||(22987533-22987641)
[»] chr2 (4 HSPs)
chr2 (219-334)||(17162194-17162305)
chr2 (215-334)||(13370172-13370287)
chr2 (184-319)||(20515755-20515886)
chr2 (192-291)||(15438276-15438372)
[»] scaffold0003 (1 HSPs)
scaffold0003 (219-334)||(89567-89678)
[»] chr1 (4 HSPs)
chr1 (219-330)||(16083457-16083564)
chr1 (219-329)||(25018448-25018554)
chr1 (219-334)||(33379538-33379649)
chr1 (273-334)||(13966252-13966313)
[»] scaffold0167 (1 HSPs)
scaffold0167 (194-291)||(742-835)
[»] scaffold0337 (1 HSPs)
scaffold0337 (220-252)||(17033-17065)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 14319592 - 14319918
Alignment:
Q  14 agatgaagtacctcttgtacttggaaacaatagtgcttatcttggaataatttacttgctgcagtttagtctttgttcttgcactgaataattgnnnnnn 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          
T  14319592 agatgaagtacctcttgtacttggaaacaatagtgcttatcttggaataatttacttgctgaagtttagtctttgttcttgcactgaataattgtttttt 14319691  T
Q  114 ncttcttagtttcatagttcttcaaattattattttgtactacaagatggtgaaaatgaaatgatataagtgtttacaagtgtttttgataaactgtaaa 213  Q
     |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14319692 tcttcctag-ttcatagttcttcaaattattattttgtactacaagatggtgaaaatgaaatgatataagtgtttacaagtgtttttgataaactgtaaa 14319790  T
Q  214 tctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattca 313  Q
    |||| |||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  14319791 tctagttttaattattaaaagaaggatcaaactagaaatcaatcctagaatatgttgtgcaatcgttttccaaaaaataaatgaattttcatcgtattta 14319890  T
Q  314 taggtttcgttatgaacaagacaaattt 341  Q
    ||||||||||||||||||||||||||||    
T  14319891 taggtttcgttatgaacaagacaaattt 14319918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 34992157 - 34992267
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||| ||||||||||| |||||||||  |||    |||||||||| || |||||||||  ||||||| |||||| |||||| |||||| |||||||||||    
T  34992157 ttttaattattacaagcaggatcaaatcaga----aatcctagga-atattgtgcaatatttttccataaaatacatgaatgttcatcatattcataggt 34992251  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||||||||    
T  34992252 tgctttatgaacaaga 34992267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 10163557 - 10163463
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcatagg 317  Q
    |||||||||||||||| |||||||||| |||||||    ||| ||||||||||||||||  |||||| |||||  |||| | |||||| ||||||||||    
T  10163557 ttttgattattacaagcaggatcaaaccagaaatt----ctaagatatgttgtgcaatctgtttccagaaaattcatgagtgttcatcatattcatagg 10163463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 24154463 - 24154357
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| ||||||||||     || ||||||||||  |||||||||||| ||||||| |||||  |||| | |||||| |||||||||||    
T  24154463 ttttgattattacaagtaggatcaaac----cataaatcctaggacttgttgtgcaatctttttccagaaaattcatgagtgttcatcatattcataggt 24154368  T
Q  319 ttcgttatgaa 329  Q
    | | |||||||    
T  24154367 tgctttatgaa 24154357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 28712178 - 28712288
Alignment:
Q  220 tttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtt 319  Q
    ||||||||||||| | | |||||||| ||||||    ||||||| ||||||||||||| ||||||| ||| |  |||||| |||||  ||||||||||||    
T  28712178 tttgattattacaggcaagatcaaaccagaaat----cctaggacatgttgtgcaatctttttccataaagtgtatgaatgttcataatattcataggtt 28712273  T
Q  320 tcgttatgaacaaga 334  Q
     | ||||||||||||    
T  28712274 gctttatgaacaaga 28712288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 242308 - 242231
Alignment:
Q  254 aatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaaca 331  Q
    |||||||||| ||||||||||||  ||||||| ||| |   ||||| |||||| |||||||||||| | |||||||||    
T  242308 aatcctaggacatgttgtgcaatatttttccagaaagtgcttgaatgttcatcatattcataggttactttatgaaca 242231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 6038783 - 6038877
Alignment:
Q  236 aggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    |||||||||||||||||    ||||||  || |||||||||| ||||||| |||||   ||||| |||||| ||||||||| || | ||||||||||||    
T  6038783 aggatcaaactagaaat----cctagggaatattgtgcaatctttttccagaaaatgcttgaatgttcatcatattcatagtttgctttatgaacaaga 6038877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 18847228 - 18847336
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    ||||||||||||||||||||||||||||||||||    |||| || ||||||||||||| |||||||||||||| |||||| ||||   |||||||||||    
T  18847228 ttttgattattacaagaaggatcaaactagaaat----cctatgacatgttgtgcaatctttttccaaaaaatacatgaatgttcaatatattcataggt 18847323  T
Q  319 ttcgttatgaaca 331  Q
    | | |||||||||    
T  18847324 tgctttatgaaca 18847336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 22455402 - 22455300
Alignment:
Q  228 ttacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatg 327  Q
    ||||||| |||||||||| ||||||    ||||||||||||||||||||| ||||||||||| || |||||| |||||| |||||||||||| | |||||    
T  22455402 ttacaagcaggatcaaaccagaaat----cctaggatatgttgtgcaatctttttccaaaaagtacatgaatgttcatcatattcataggttgctttatg 22455307  T
Q  328 aacaaga 334  Q
    || ||||    
T  22455306 aataaga 22455300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 5892430 - 5892499
Alignment:
Q  265 atgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    ||||||||||||  ||||||||||||| | ||||| |||||| |||||||||||| | ||||||||||||    
T  5892430 atgttgtgcaatgattttccaaaaaatgattgaatgttcatcatattcataggttactttatgaacaaga 5892499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 15341217 - 15341111
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    ||||||| |||||||| |||||||||| | ||||    |||| || || |||||||||| ||||||| |||||| |||| | |||||| |||||||||||    
T  15341217 ttttgataattacaagtaggatcaaaccaaaaat----cctatgacatattgtgcaatcattttccagaaaatacatgagtgttcatcatattcataggt 15341122  T
Q  319 ttcgttatgaa 329  Q
    | | |||||||    
T  15341121 tgctttatgaa 15341111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 15430282 - 15430176
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    ||||||| |||||||| |||||||||| | ||||    |||| || || |||||||||| ||||||| |||||| |||| | |||||| |||||||||||    
T  15430282 ttttgataattacaagtaggatcaaaccaaaaat----cctatgacatattgtgcaatcattttccagaaaatacatgagtgttcatcatattcataggt 15430187  T
Q  319 ttcgttatgaa 329  Q
    | | |||||||    
T  15430186 tgctttatgaa 15430176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 15521586 - 15521480
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    ||||||| |||||||| |||||||||| | ||||    |||| || || |||||||||| ||||||| |||||| |||| | |||||| |||||||||||    
T  15521586 ttttgataattacaagtaggatcaaaccaaaaat----cctatgacatattgtgcaatcattttccagaaaatacatgagtgttcatcatattcataggt 15521491  T
Q  319 ttcgttatgaa 329  Q
    | | |||||||    
T  15521490 tgctttatgaa 15521480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 28862742 - 28862662
Alignment:
Q  254 aatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    |||||||||  ||||||||||||| |||| || |||||| |||||| |||||| ||||||||| || | ||| ||||||||    
T  28862742 aatcctagggcatgttgtgcaatcgtttttcacaaaatacatgaatgttcatcatattcatagtttactttaagaacaaga 28862662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 22450366 - 22450255
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| | |||||||| | ||||    |||  || ||||| ||||||| ||||||||||| |  |||||| |||||| |||||||||||    
T  22450366 ttttgattattacaagcaagatcaaaccataaat----cctgtgacatgttatgcaatctttttccaaaaattgtatgaatcttcatcatattcataggt 22450271  T
Q  319 ttcgttatgaacaaga 334  Q
    |   ||||||||||||    
T  22450270 tgttttatgaacaaga 22450255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 28291832 - 28291766
Alignment:
Q  268 ttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    |||||||||| ||||||| |||||  || ||| |||||| |||||||||||| | ||||||||||||    
T  28291832 ttgtgcaatctttttccataaaatgcataaatgttcatcatattcataggttactttatgaacaaga 28291766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 32352009 - 32352089
Alignment:
Q  254 aatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    |||||||||| ||||||||  ||| ||||| | |||||| |||||| ||| || ||||||||||||   ||||||||||||    
T  32352009 aatcctaggacatgttgtgacatctttttctataaaatacatgaatgttcgtcatattcataggttaatttatgaacaaga 32352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 32368670 - 32368750
Alignment:
Q  254 aatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    |||||||||| ||||||||  ||| ||||| | |||||| |||||| ||| || ||||||||||||   ||||||||||||    
T  32368670 aatcctaggacatgttgtgacatctttttctataaaatacatgaatgttcgtcatattcataggttaatttatgaacaaga 32368750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 10292313 - 10292457
Alignment:
Q  40 acaatagtgcttatcttggaataatttacttgctgcagtttagtctttgttcttgcactgaataattg-nnnnnnncttcttagtttcatagttcttcaa 138  Q
    ||||||| | |||||||  |||||||||||||||||| |||||| ||||||||||||| |||||||||        ||||||  ||||||||||||| |     
T  10292313 acaatagaggttatcttataataatttacttgctgcaatttagtttttgttcttgcaccgaataattgtattttttcttcttgatttcatagttcttaat 10292412  T
Q  139 attattattttgtactacaagatggtgaaaatgaaatgatataag 183  Q
     ||||||||||||||||||||||| || ||||||||||| |||||    
T  10292413 gttattattttgtactacaagatgatggaaatgaaatgaaataag 10292457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 28036931 - 28037077
Alignment:
Q  184 tgtttacaagtgtttttgataaactgtaaatctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttc 283  Q
    ||||||| |||||||||| |||||   ||| ||| |||||||||||||||| |||||||||  |||    |||| ||||||||||||||||||| ||||     
T  28036931 tgtttactagtgtttttgttaaacaacaaaactagttttgattattacaagtaggatcaaatcaga----aatcttaggatatgttgtgcaatctttttt 28037026  T
Q  284 caaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
     | ||| |  |||||| |||||| |||||||||||| | |||| |||||||    
T  28037027 tagaaagtgtatgaatgttcatcatattcataggttgctttataaacaaga 28037077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 11994233 - 11994123
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||| ||||||||||| |||||||||  |||    |||||||||| || |||||||||  ||||||| |||||| |||||| |||||| |||||||||||    
T  11994233 tttttattattacaagcaggatcaaatcaga----aatcctagga-atattgtgcaatatttttccataaaatacatgaatgttcatcatattcataggt 11994139  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||||||||    
T  11994138 tgctttatgaacaaga 11994123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 9022817 - 9022736
Alignment:
Q  254 aatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaagac 335  Q
    |||||||||| ||||||||||||  |||| |||||||| | ||||  ||||||  ||||||||||| | |||||||||||||    
T  9022817 aatcctaggacatgttgtgcaatgtttttacaaaaaatgagtgaacgttcatcaaattcataggttgctttatgaacaagac 9022736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 10258843 - 10258902
Alignment:
Q  48 gcttatcttggaataatttacttgctgcagtttagtctttgttcttgcactgaataattg 107  Q
    |||||||||  |||| ||||||||||||| |||||| ||||| ||||||| |||||||||    
T  10258843 gcttatcttaaaatattttacttgctgcaatttagtttttgtgcttgcaccgaataattg 10258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 18084096 - 18084129
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaat 252  Q
    ||||| ||||||||||||||||||||||||||||    
T  18084096 ttttggttattacaagaaggatcaaactagaaat 18084129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 15987374 - 15987485
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    ||||| |||||||||| ||||||||||||||||||    |||||| ||||||||||||| ||||||| |||||| |||||| |||||| | |||||||||    
T  15987374 ttttggttattacaagtaggatcaaactagaaatt----ctaggacatgttgtgcaatctttttccataaaatatatgaatgttcatcattttcataggt 15987469  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||||||||    
T  15987470 tgctttatgaacaaga 15987485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 14132394 - 14132283
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    ||||| |||||||||| |||||||||||||||||    || |||| ||||||||||||  ||||||||||| | | ||||| ||||||  ||||||||||    
T  14132394 ttttggttattacaagcaggatcaaactagaaat----ccaaggacatgttgtgcaatgtttttccaaaaagtgagtgaatgttcatcaaattcataggt 14132299  T
Q  319 ttcgttatgaacaaga 334  Q
    ||| ||||||||||||    
T  14132298 ttctttatgaacaaga 14132283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 45280259 - 45280154
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||||| |||||| ||||||||    | ||||||||||||||||||| ||||||| |||||| ||  || |||||| |||||||||||    
T  45280259 ttttgattattacaagaacgatcaacctagaaat----cgtaggatatgttgtgcaatctttttccagaaaatatatatatgttcatcatattcataggt 45280164  T
Q  319 ttcgttatga 328  Q
    | | ||||||    
T  45280163 tgctttatga 45280154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 44451182 - 44451072
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| | |||||||  |||    |||||||||| || |||||||||| ||||||| |||||| |||||| |||||| |||||||||||    
T  44451182 ttttgattattacaagcaagatcaaatcaga----aatcctagga-atattgtgcaatctttttccataaaatacatgaatgttcatcatattcataggt 44451088  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||||||||    
T  44451087 tgctttatgaacaaga 44451072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 4023034 - 4022926
Alignment:
Q  222 tgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttc 321  Q
    ||||||||||||| |||||||||| |||| |    | || || ||||||||||||| ||||| |||||||| |||||| |||||| ||||||||||||      
T  4023034 tgattattacaagcaggatcaaaccagaatt----cttatgacatgttgtgcaatctttttctaaaaaatacatgaatgttcatcatattcataggttgt 4022939  T
Q  322 gttatgaacaaga 334  Q
     ||||||||||||    
T  4022938 tttatgaacaaga 4022926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 53589421 - 53589309
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatc-cttttccaaaaaataaatgaattttcatcgtattcatagg 317  Q
    |||||||||||||||| |||||||||| |||    |||||||||| || ||||||||||  |||| || |||||| |||||| |||||| |||||||| |    
T  53589421 ttttgattattacaagtaggatcaaaccaga----aatcctaggacattttgtgcaatctttttttcagaaaatacatgaatgttcatcatattcatatg 53589326  T
Q  318 tttcgttatgaacaaga 334  Q
    || | ||||||||||||    
T  53589325 ttgctttatgaacaaga 53589309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 1744883 - 1744994
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||  ||||| ||| |||||||    | ||||||||||||||||||| |||| ||||||||  |||||| |||||| |||| ||||||    
T  1744883 ttttgattattacaaataggattaaattagaaat----cttaggatatgttgtgcaatcttttttcaaaaaatgtatgaatgttcatcatatttataggt 1744978  T
Q  319 ttcgttatgaacaaga 334  Q
    | | |||| |||||||    
T  1744979 tgctttataaacaaga 1744994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 9101957 - 9101834
Alignment:
Q  215 ctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaat-ccttttccaaaaaataaatgaattttcatcgtattca 313  Q
    |||| |||||||||||||||||| |||||||||||||||    ||| ||||| |||||||||   |||| |||||| |   ||||| || ||| ||||||    
T  9101957 ctaactttgattattacaagaagcatcaaactagaaatt----ctatgatatattgtgcaatgtttttttcaaaaagtgtctgaatgtttatcatattca 9101862  T
Q  314 taggtttcgttatgaacaagacaaattt 341  Q
    |||||| | |||||||||||||||||||    
T  9101861 taggttgctttatgaacaagacaaattt 9101834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 25466277 - 25466373
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| ||||||||||| ||||   ||||||||| ||||| ||||||| ||| | | |||||| |||||| |||||| |||||||||||    
T  25466277 ttttgattattacaagcaggatcaaact-gaaa---atcctaggacatgttttgcaatcttttcctagaaaatatatgaatgttcatcatattcataggt 25466372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 48895836 - 48895908
Alignment:
Q  215 ctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaat 291  Q
    |||||||| ||||||||||| ||||||||||||||||||     ||||| ||| ||||||||| |||||||||||||    
T  48895836 ctaatttttattattacaagcaggatcaaactagaaatt----ttaggacatgatgtgcaatctttttccaaaaaat 48895908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 10235814 - 10235959
Alignment:
Q  184 tgtttacaagtgtttttgataaactgtaaatctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttc 283  Q
    ||||||| |||||||||| |||||  |||  ||| |||||||||||||||| | |||||||| |||||||    |||||| ||||||||||||| |||||    
T  10235814 tgtttactagtgtttttggtaaacaataagactagttttgattattacaagcatgatcaaaccagaaatt----ctaggacatgttgtgcaatctttttc 10235909  T
Q  284 caaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    ||||||||| |||||| |||||| | ||||||| || | ||||||||||||    
T  10235910 caaaaaatacatgaatgttcatcat-ttcatagtttgctttatgaacaaga 10235959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 9422907 - 9423017
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| |||||||||  |||    |||||||||| || |||||||||| ||||||| |||||| |||||| |||||| |||||||||||    
T  9422907 ttttgattattacaagcaggatcaaatcaga----aatcctagga-atattgtgcaatctttttccataaaatacatgaatgttcatcatattcataggt 9423001  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||||||||    
T  9423002 tactttatgaacaaga 9423017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 28619549 - 28619441
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||| ||||||||||| |||||||||| |||||| |    ||||| ||||||||||||||||||||| |||||   ||||| |||||| |||||||| ||    
T  28619549 ttttaattattacaagcaggatcaaaccagaaatca----taggacatgttgtgcaatccttttccagaaaatgtgtgaatgttcatcatattcataagt 28619454  T
Q  319 ttcgttatgaaca 331  Q
    | | |||||||||    
T  28619453 tgctttatgaaca 28619441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 22987533 - 22987641
Alignment:
Q  222 tgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggtttc 321  Q
    ||||||| ||||| ||||||||||||||||| |    || || ||||||||||||| ||||||| ||| |   ||||| |||||| |||||||||||| |    
T  22987533 tgattataacaagcaggatcaaactagaaatca----tatgacatgttgtgcaatctttttccagaaagtgtgtgaatgttcatcatattcataggttgc 22987628  T
Q  322 gttatgaacaaga 334  Q
     |||| |||||||    
T  22987629 tttataaacaaga 22987641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 17162305 - 17162194
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| |||||||||| ||||||    |||| || ||||||||||||| ||||||| |||||| |||||| |||||| |||||||||||    
T  17162305 ttttgattattacaagcaggatcaaaccagaaat----cctatgacatgttgtgcaatctttttccataaaatacatgaatgttcatcatattcataggt 17162210  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||| ||||    
T  17162209 tgctttatgaataaga 17162194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 13370172 - 13370287
Alignment:
Q  215 ctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcat 314  Q
    |||||||| ||||||||||| |||||||||  |||||||    |||| | ||||||||||||| ||||||||||||||  ||||| |||||| |||||||    
T  13370172 ctaattttaattattacaagcaggatcaaatcagaaatt----ctagaacatgttgtgcaatctttttccaaaaaatatgtgaatgttcatcatattcat 13370267  T
Q  315 aggtttcgttatgaacaaga 334  Q
    || ||   ||||||||||||    
T  13370268 agtttattttatgaacaaga 13370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 20515886 - 20515755
Alignment:
Q  184 tgtttacaagtgtttttgataaactgtaaatctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttc 283  Q
    |||||||  ||||||||| |||||  |||  ||| |||||||||||||||| |||||||||| |||    |||| ||||| |||||||| |||| |||||    
T  20515886 tgtttaccggtgtttttggtaaacaataagactagttttgattattacaagcaggatcaaaccaga----aatcttaggacatgttgtgtaatctttttc 20515791  T
Q  284 caaaaaataaatgaattttcatcgtattcataggtt 319  Q
    || ||| |  |||||| |||||| ||||||||||||    
T  20515790 cagaaagtgtatgaatgttcatcatattcataggtt 20515755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 291
Target Start/End: Complemental strand, 15438372 - 15438276
Alignment:
Q  192 agtgtttttgataaactgtaaatctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaat 291  Q
    ||||||||||||||||| ||| ||||  ||||||||| ||||| ||||| |||||||||   |||| || || ||||||||||||| |||| || |||||    
T  15438372 agtgtttttgataaactataattctagctttgattatcacaagcaggataaaactagaa---aatcatatgacatgttgtgcaatcttttttcagaaaat 15438276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 89567 - 89678
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| ||||| |||  |||    |||||||||| || ||| |||||| ||||||| |||||| |||||| |||||| |||||||||||    
T  89567 ttttgattattacaaggaggattaaagcaga----aatcctaggacatattgcgcaatctttttccataaaatatatgaatgttcatcatattcataggt 89662  T
Q  319 ttcgttatgaacaaga 334  Q
    |   ||||||||||||    
T  89663 tgttttatgaacaaga 89678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 330
Target Start/End: Original strand, 16083457 - 16083564
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||  |||||||||| |||||     ||||||| ||||| ||||||| ||||||| |||||| || ||| ||||||  ||||||||||    
T  16083457 ttttgattattacaaacaggatcaaaccagaaac----cctaggacatgttatgcaatctttttccataaaatagattaatgttcatcaaattcataggt 16083552  T
Q  319 ttcgttatgaac 330  Q
    | | ||||||||    
T  16083553 tgctttatgaac 16083564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 25018448 - 25018554
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| | |||||||| ||||||    ||||||| ||||||||||||| ||||| | ||||||   || | |||||| |||||||||||    
T  25018448 ttttgattattacaagcatgatcaaaccagaaat----cctaggacatgttgtgcaatctttttctagaaaatacgcgagtgttcatcatattcataggt 25018543  T
Q  319 ttcgttatgaa 329  Q
    | | |||||||    
T  25018544 tgctttatgaa 25018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 33379649 - 33379538
Alignment:
Q  219 ttttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaataaatgaattttcatcgtattcataggt 318  Q
    |||||||||||||||| |||| ||||  |||    |||| ||||| || |||||||||| |||| || ||| || |||||| |||||| ||| |||||||    
T  33379649 ttttgattattacaagcaggaccaaatcaga----aatcttaggacatattgtgcaatcttttttcataaagtatatgaatgttcatcatatccataggt 33379554  T
Q  319 ttcgttatgaacaaga 334  Q
    | | ||||||||||||    
T  33379553 tgctttatgaacaaga 33379538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 13966252 - 13966313
Alignment:
Q  273 caatccttttccaaaaaataaatgaattttcatcgtattcataggtttcgttatgaacaaga 334  Q
    ||||| ||||| |||||||| |||||| |||||| ||||||||||||   ||||||||||||    
T  13966252 caatctttttctaaaaaatacatgaatgttcatcatattcataggttgttttatgaacaaga 13966313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 835 - 742
Alignment:
Q  194 tgtttttgataaactgtaaatctaattttgattattacaagaaggatcaaactagaaattaatcctaggatatgttgtgcaatccttttccaaaaaat 291  Q
    |||||||| ||||||  || ||||  ||||||||||||||| | | |||||||||||||    ||||||| ||||||||||||| ||||||| |||||    
T  835 tgtttttggtaaactacaagtctagctttgattattacaagcaagttcaaactagaaat----cctaggacatgttgtgcaatctttttccataaaat 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 17033 - 17065
Alignment:
Q  220 tttgattattacaagaaggatcaaactagaaat 252  Q
    ||||||||||||||| |||||||||||||||||    
T  17033 tttgattattacaagcaggatcaaactagaaat 17065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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