View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_12 (Length: 342)
Name: NF8123_low_12
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 10162082 - 10162401
Alignment:
| Q |
8 |
ttgatagggaaaatcacttgcaataagaagcattgggcagtgggacccttcaaccctctaagcattgatcaggagaagaaagattcaaagggtaggcact |
107 |
Q |
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| T |
10162082 |
ttgatagagaaaatcacttgcaataagaagcattgggcagtgggacccttcaaccctctaaccattgatcaggagaagaaagattcaaagggtaggcact |
10162181 |
T |
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| Q |
108 |
catgcatggaatggcttgataaacaagaaacaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgc |
207 |
Q |
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| T |
10162182 |
catgcatggaatggcttgataaacaagaaacaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgc |
10162281 |
T |
|
| Q |
208 |
aactggattgaaacaaagcaagataaagtttatttgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactt |
307 |
Q |
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| T |
10162282 |
aactggattgaaacaaagcaagataaagtttatttgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactt |
10162381 |
T |
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| Q |
308 |
tcgaaagggtttgaagagag |
327 |
Q |
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| T |
10162382 |
tcaaaagggtttgaagagag |
10162401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 327
Target Start/End: Original strand, 1609077 - 1609399
Alignment:
| Q |
2 |
ttggtgttgatagggaaaatcacttgcaataagaagcattgggcagtgggacccttcaaccctctaagcattgatcaggagaagaaagattcaaagggta |
101 |
Q |
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| T |
1609077 |
ttggagttgatagagagaatcacttgcagtaagaagcattgggcagttggacccttcaaccctcttaccattga---gaagaagaaagattcaaagggta |
1609173 |
T |
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| Q |
102 |
ggcactcatgcatggaatggcttgataaacaagaaacaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaaca |
201 |
Q |
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| T |
1609174 |
ggcacttatgtatggaatggcttgataaacaagaaccaaactcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaaca |
1609273 |
T |
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| Q |
202 |
gattgcaactggattgaaacaaagcaagataaagtttatttgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggt |
301 |
Q |
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| T |
1609274 |
gattgcaactgggttggaacaaagcaagataaagttcatttgggtgttgagagatgctgataaaggagacatatttgatggaaatgaagggaaaagaggt |
1609373 |
T |
|
| Q |
302 |
gaactttcgaaagggtttgaagagag |
327 |
Q |
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|||||| | ||||||||||||||||| |
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| T |
1609374 |
gaacttgcaaaagggtttgaagagag |
1609399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 263
Target Start/End: Original strand, 37721664 - 37721784
Alignment:
| Q |
143 |
tcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaagtttattt |
242 |
Q |
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||||| || ||| |||||||||| || |||||| |||| | ||| ||| ||||| | || |||||| ||| ||| ||||||| ||| ||| ||||||| |
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| T |
37721664 |
tcagtaatttatatatcttttgggaccacaacagccttaaaagaggaacaaattatagagcttgcaaatgggttggaacaaagtaagcaaaaatttattt |
37721763 |
T |
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| Q |
243 |
gggtgttgagagatgctgata |
263 |
Q |
| |
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|||| || ||||||||||||| |
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| T |
37721764 |
gggtattaagagatgctgata |
37721784 |
T |
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