View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_13 (Length: 342)
Name: NF8123_low_13
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 34379739 - 34380064
Alignment:
| Q |
17 |
gtgtgctataaaatttctagctactttgaggatggatattataatacaatactcaaactctactcattttcatccctactaaaaactaagaaatcaaacc |
116 |
Q |
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| T |
34379739 |
gtgtgctataaaatttctagctactttgaggatggatattataatacaatactcaaactctactcattttcatccctactaaaaactaagaaatcaaacc |
34379838 |
T |
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| Q |
117 |
tagttcttgacgagcaacgtcacagtttgtgtcagtgaatccaattctagaattagccaaatcatactccatccaaacattctgttgatgatgatgtcca |
216 |
Q |
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| T |
34379839 |
tagttgttgacgagcaacatcacagtttgtgtcagagaatccaattctagaattagccaaatcatactccatccaaacattccgttgatgatgatgtcca |
34379938 |
T |
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| Q |
217 |
ataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaataaatccaactattactctttgccacattactcactttatataacaatc |
316 |
Q |
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| T |
34379939 |
ataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaataaatccaactattactctttgctacattactcactttatataacaatc |
34380038 |
T |
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| Q |
317 |
tctctccggtcaccctcaactccgcc |
342 |
Q |
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| T |
34380039 |
tctctccggtcaccctcaactccgcc |
34380064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 30634019 - 30634152
Alignment:
| Q |
136 |
tcacagtttgtgtcagtgaatccaattctagaattagccaaatcatactccatccaaacattctgttgatgatgatgtccaataataaatgcctcaatcc |
235 |
Q |
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| T |
30634019 |
tcacattttgtatcagcaaatccaactctagagttgaccaaatcaaactccatccacacattcatttgatgataatgtccaataatatatgcctcaattc |
30634118 |
T |
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| Q |
236 |
ccaacaaatcagagttcccaaaagtgaaacaata |
269 |
Q |
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| T |
30634119 |
ccaacaaatctgaatttccaaacgtgaaacaata |
30634152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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