View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_15 (Length: 299)
Name: NF8123_low_15
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 24788866 - 24789144
Alignment:
| Q |
5 |
tatcacccagatgctggtacatcatgggagtctggagtaaggagaagcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgt |
104 |
Q |
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| T |
24788866 |
tatcacccagatgctggtacatcatgggagtctggagtaaggagaagcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgt |
24788965 |
T |
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| Q |
105 |
atggccgtgtacacgagagtgagtacaatcatagtacttcgttatatttagagaattggatttggcctaatcctaccatgtgtaaaatgtagataacaaa |
204 |
Q |
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| T |
24788966 |
atggccgtgtacacgagagtgagtacaatcatagtacttcgttatatttagagaattggatttggcctaatcctaccatgtgtaaaatgtagataacaaa |
24789065 |
T |
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| Q |
205 |
tcttttgtttgtgcaggtttgagtactgtcattggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatga |
283 |
Q |
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| T |
24789066 |
tcttttgtttgtgcaggtttgagtactgtcattggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatga |
24789144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 24300410 - 24300268
Alignment:
| Q |
11 |
ccagatgctggtacatcatgggagtctggagtaaggagaagcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggcc |
110 |
Q |
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| T |
24300410 |
ccagatgctggtacatcatgggagtctggagtaaggagaagcaaaaggttcaggacaaggcctttggaatattggaaaggggaaagaatggtgtatggcc |
24300311 |
T |
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| Q |
111 |
gtgtacacgagagtgagtacaatcatagtacttcgttatattt |
153 |
Q |
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| T |
24300310 |
gtgtacatgagagtgagtacaatcgtagtattttgttatattt |
24300268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 24300074 - 24300004
Alignment:
| Q |
213 |
ttgtgcaggtttgagtactgtcattggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatga |
283 |
Q |
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|||||||||||||||||||||||| ||||||||| || | ||||| ||| ||||||||||||||| ||||| |
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| T |
24300074 |
ttgtgcaggtttgagtactgtcatcggggtgaagcgcttttctccaggaggtgatgggaaaccaaacatga |
24300004 |
T |
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