View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8123_low_17 (Length: 294)
Name: NF8123_low_17
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_17 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 49953262 - 49952974
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgtt-cgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49953262 |
tcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacgcttcaacatttttg |
49953163 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49953162 |
gggagcggaagtgcttcgtggtggtggatcacggacacgaagagtctcatatttaattgagagatgttaatgtgtcaagtgtggattaaaataacacatt |
49953063 |
T |
|
| Q |
200 |
gaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
288 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
49953062 |
gaatggcatataatagatattgaacaatatataagtgagatgacttataatgtcataagattttggatgtaactgttatgtcaatctca |
49952974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 39974693 - 39974981
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
39974693 |
tcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaacatttttg |
39974792 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||| |||||| || | ||||||||||||||| ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
39974793 |
gggagtggaagtgcttcgtggtggtggatcgcggacacaaagagtatcgtatttaattgagagatggtaatgtgtcaagtgtgggttaaaataacatatt |
39974892 |
T |
|
| Q |
200 |
gaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
288 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||| |||||| |||| || ||||||| || |||||||| ||||||| |||||| |
|
|
| T |
39974893 |
gaatgccatataatagatattgaataacatatcagtggaatgactcataatctcttaagattttgaatgtaactgtgatgtcaatctca |
39974981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 44 - 290
Target Start/End: Original strand, 281813 - 282059
Alignment:
| Q |
44 |
gtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagag |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
281813 |
gtgttgtctcccccgtaagtcccaatggtgatatcatatacgcttcaacatttttgtggagcggaagtgctgtgtggtggtggatcgcggacacgaagag |
281912 |
T |
|
| Q |
144 |
tctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgac |
243 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
281913 |
tctcgtatttaattgagagatgttaatgtgtcaagtgtgggttaaaataacacattgaattccatataatatatattgaacaacatattagtgagatgac |
282012 |
T |
|
| Q |
244 |
ttgtaatgtcataagattatggatgtaactttgatgtccatctcatt |
290 |
Q |
| |
|
| ||||||| | ||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
282013 |
tcataatgtcttgagattttggatgtaactgtgatgtcaatctcatt |
282059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 13228578 - 13228783
Alignment:
| Q |
36 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagac |
135 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| ||||| || |||||||||||| ||||| |
|
|
| T |
13228578 |
tcacacaagtgttggctcccca-taagtttcaatggtgatatcatatccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagac |
13228676 |
T |
|
| Q |
136 |
acgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagt |
235 |
Q |
| |
|
|| || |||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||| || |||||||| |
|
|
| T |
13228677 |
acaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagatgttgagaaacatataagt |
13228774 |
T |
|
| Q |
236 |
gagatgact |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
13228775 |
gagatgact |
13228783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 42757706 - 42757638
Alignment:
| Q |
110 |
gtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtg |
182 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
42757706 |
gtgcttcttggtggtggatcacagacacggagagtctc----ttaatagagagatgttaatgtgtcaattgtg |
42757638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 50814674 - 50814725
Alignment:
| Q |
31 |
tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
82 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
50814674 |
tcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatat |
50814725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 21589072 - 21588784
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| || || |
|
|
| T |
21589072 |
tcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaacaattatg |
21588973 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
21588972 |
gggagcgaaagtgcttcgtggtggtggatcgtggacacgaagagtatcgtatttaattgagagatggtaatgtgtcaagggtgggttaaaataacacatt |
21588873 |
T |
|
| Q |
200 |
gaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
288 |
Q |
| |
|
||||| |||||||||||||||||| || |||| |||||||||||| |||| || ||||||| || |||||||| ||||||| |||||| |
|
|
| T |
21588872 |
gaatgtcatataatagatattgaataacatatcagtgagatgactcataatctcttaagattttgaatgtaactgtgatgtcaatctca |
21588784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13756385 - 13756590
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
||||||||||| ||| | ||||| |||||| |||| ||||||||| |||| || || | |||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
13756385 |
tcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcatatctgcttcaacatttttg |
13756484 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||| || |||||||||||| ||||| ||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
13756485 |
gggagcggaagtggtccgtggtggtggatagtagatacaaagagtctcatgcttaatatagatatgttaatgtgtcaagtgtgagttaaaataacacatt |
13756584 |
T |
|
| Q |
200 |
gaatgc |
205 |
Q |
| |
|
|||||| |
|
|
| T |
13756585 |
gaatgc |
13756590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 23142002 - 23141828
Alignment:
| Q |
31 |
tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatca |
130 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||| ||| ||||||||||||| |||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
23142002 |
tcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctgcttcaacattttcggggagcggaagtggtccgtggtggtggatag |
23141903 |
T |
|
| Q |
131 |
cagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
205 |
Q |
| |
|
|||| || ||||||||||| ||||| |||||||||||| ||||||| | || ||||||||||||||||||||| |
|
|
| T |
23141902 |
cagatacagagagtctcatgcttaatagagagatgttaacgtgtcaagtatgagttaaaataacacattgaatgc |
23141828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 42797522 - 42797318
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
||||| ||||| ||| | ||||| |||||| |||| ||||||||||||| |||| | ||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
42797522 |
tcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgctcctc-gtaagtctcaatggtgatatcatatctgcttcaacatttttg |
42797424 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
||||||||||||| | |||||||||||| |||| || ||||||||||| ||||| || ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
42797423 |
gggagcggaagtggtctgtggtggtggatagcagatacagagagtctcatgcttaatagaaagatgttaatgtgtcaagtgtgagttaaaataacacatt |
42797324 |
T |
|
| Q |
200 |
gaatgc |
205 |
Q |
| |
|
|||||| |
|
|
| T |
42797323 |
gaatgc |
42797318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 10901546 - 10901475
Alignment:
| Q |
134 |
acacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
205 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
10901546 |
acacggagagtctcgtacttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgc |
10901475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 36095966 - 36096247
Alignment:
| Q |
8 |
tgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcg |
106 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36095966 |
tgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatggtgatatcatatacgcttcaacatttttggggagcg |
36096065 |
T |
|
| Q |
107 |
gaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgcc |
206 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| || | |||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
36096066 |
gaagtgcttcgtggtggtggatcgcggacacgaagagtatcgtatttaattgagagattgtaatgtgtcaagtgtgggttaaaataatacattgaatgcc |
36096165 |
T |
|
| Q |
207 |
atataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
288 |
Q |
| |
|
||||||| ||||||||| || |||| | |||||||||| |||| || ||||||| || |||||||| |||||| |||||| |
|
|
| T |
36096166 |
atataattgatattgaataacatatcaatgagatgactcataatctcttaagattttgaatgtaactgcgatgtcaatctca |
36096247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 12746201 - 12746103
Alignment:
| Q |
31 |
tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
12746201 |
tcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttcaacatttttggagagcggaaatgctttgtggtggtggatc |
12746103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 50332056 - 50331954
Alignment:
| Q |
140 |
agagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgaga |
239 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||| || |||||||||||| |
|
|
| T |
50332056 |
agagtttcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagatgttgagaaacatataagtgaga |
50331959 |
T |
|
| Q |
240 |
tgact |
244 |
Q |
| |
|
||||| |
|
|
| T |
50331958 |
tgact |
50331954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 50332128 - 50332063
Alignment:
| Q |
36 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggg |
101 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
50332128 |
tcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttcaacatttttggg |
50332063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 1599549 - 1599773
Alignment:
| Q |
19 |
tttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcg |
117 |
Q |
| |
|
||||| |||||| |||| |||||||||| ||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | | |
|
|
| T |
1599549 |
tttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaacattttttgggagcggaagtggtatg |
1599648 |
T |
|
| Q |
118 |
tggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagat |
217 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
1599649 |
tggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagat |
1599746 |
T |
|
| Q |
218 |
attgaacaatatataagtgagatgact |
244 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
1599747 |
gttgagaaacatataagtgagatgact |
1599773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 26894788 - 26894957
Alignment:
| Q |
36 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagac |
135 |
Q |
| |
|
|||||||| ||||| || |||| |||||||||| |||||| |||| |||||||||||||| |||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
26894788 |
tcacacaactgttggctaccccataagtcccaataatgatataatatccacttcaacattttaggggagtggaagtggttcatggtggtggattgcagac |
26894887 |
T |
|
| Q |
136 |
acgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
205 |
Q |
| |
|
||| | |||||||| ||||| ||||||||||||| | |||| |||| |||||||||||||||| |||| |
|
|
| T |
26894888 |
acggatagtctcatacttaatggagagatgttaatatatcaagtgtgatttaaaataacacattggatgc |
26894957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 33445 - 33240
Alignment:
| Q |
36 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagac |
135 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||| | |||||||||| | |||||||||||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
33445 |
tcacacaagtgttggctcccca-taagtctcaatgttgatatcatacccgcttcaacatttttgggaagcggaagtggttcgtggtggtggatcgcagac |
33347 |
T |
|
| Q |
136 |
acgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagt |
235 |
Q |
| |
|
|| |||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
33346 |
acagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgc--aatagtagatgttgaacaacatataagt |
33249 |
T |
|
| Q |
236 |
gagatgact |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
33248 |
gagatgact |
33240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 5789072 - 5788867
Alignment:
| Q |
36 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagac |
135 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||| | |||||||||| | |||||||||||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
5789072 |
tcacacaagtgttggctcccca-taagtctcaatgttgatatcatacccgcttcaacatttttgggaagcggaagtggttcgtggtggtggatcgcagac |
5788974 |
T |
|
| Q |
136 |
acgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagt |
235 |
Q |
| |
|
|| |||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
5788973 |
acagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgc--aatagtagatgttgaacaacatataagt |
5788876 |
T |
|
| Q |
236 |
gagatgact |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
5788875 |
gagatgact |
5788867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3395689 - 3395448
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
||||||||||| ||| | ||||| ||| || |||| ||||||||||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||| |
|
|
| T |
3395689 |
tcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtctcccca-taagttccaatggtgatatcatatccgcttcaacatttttg |
3395591 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
|||||| ||||| || |||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||| || |
|
|
| T |
3395590 |
gggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataacacttt |
3395491 |
T |
|
| Q |
200 |
gaatgccatataatagatattgaacaatatataagtgagatgact |
244 |
Q |
| |
|
|||||| ||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
3395490 |
gaatgc--aatagtagatgttgagaaacatataagtgagatgact |
3395448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 41754580 - 41754529
Alignment:
| Q |
31 |
tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
82 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
41754580 |
tcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatat |
41754529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33014112 - 33014000
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
33014112 |
tcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatatacgcttcaacatttttg |
33014013 |
T |
|
| Q |
100 |
gggagcggaagtg |
112 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33014012 |
gggagcggaagtg |
33014000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 38016166 - 38015928
Alignment:
| Q |
3 |
acttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggg |
101 |
Q |
| |
|
||||||||| ||| | ||||| |||| | |||| ||||||||||| || |||||| |||||||||| || |||||||||| | |||||||||||||| | |
|
|
| T |
38016166 |
acttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggctcccca-taagtcccaatggcgatatcatatccgcttcaacatttttgtg |
38016068 |
T |
|
| Q |
102 |
gagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattga |
201 |
Q |
| |
|
|| |||||||| |||||||||||||||| ||||| || |||||||| || || |||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
38016067 |
gaacggaagtggttcgtggtggtggatcgtggacac-aaaagtctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattga |
38015969 |
T |
|
| Q |
202 |
atgccatataatagatattgaacaatatataagtgagatgact |
244 |
Q |
| |
|
|||| ||| ||||| |||| ||| ||||||||||||||||| |
|
|
| T |
38015968 |
atgc--aatagtagatgttgagcaacatataagtgagatgact |
38015928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 33013989 - 33013852
Alignment:
| Q |
151 |
tttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaat |
250 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||| |||| |
|
|
| T |
33013989 |
tttaattgagagatgctaatgtgtcaagtgtgggttaaaataacacattgaatttcatataatatatattgaacaacatattagtgagatgactcataat |
33013890 |
T |
|
| Q |
251 |
gtcataagattatggatgtaactttgatgtccatctca |
288 |
Q |
| |
|
||| ||||| ||||||||| | ||||||| |||||| |
|
|
| T |
33013889 |
gtcttaagaacttggatgtaattgtgatgtcaatctca |
33013852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 43387335 - 43387132
Alignment:
| Q |
1 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
99 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| || | |||||||||||||| ||||| |||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
43387335 |
tcacttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggatcccca-taagtcccaatggtgatatcatatccgtttcaacatttttt |
43387237 |
T |
|
| Q |
100 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
199 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| |||||||| |||||||| | |||| |||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
43387236 |
gggagcaaaagtggttcgtggtg-tggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacatt |
43387138 |
T |
|
| Q |
200 |
gaatgc |
205 |
Q |
| |
|
|||||| |
|
|
| T |
43387137 |
gaatgc |
43387132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 14411 - 14503
Alignment:
| Q |
36 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggat |
128 |
Q |
| |
|
|||||||||||||| |||| || |||||| || ||||||||||||| | |||||||||||||| |||||||| ||| |||||| |||||||| |
|
|
| T |
14411 |
tcacacaagtgttggctcctccataagtcttaatggtgatatcatatccgcttcaacatttttgaggagcggatgtggttcgtgatggtggat |
14503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 14538 - 14595
Alignment:
| Q |
185 |
ttaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
244 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||| |||||| |||||||||| |
|
|
| T |
14538 |
ttaaaataacacattgaatgc--aatagtagatgttgaacaacatataaatgagatgact |
14595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 50384 - 50251
Alignment:
| Q |
72 |
tgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatg |
171 |
Q |
| |
|
||||||||||| | ||||||| ||||| |||||| |||||| ||||| |||||||||| | |||| |||||||| | ||||| |||||| ||||| |
|
|
| T |
50384 |
tgatatcatatccgcttcaacgttttttgggagcagaagtggttcgtagtggtggatcgcggacatagagagtctcgtacttaatggagagaatttaata |
50285 |
T |
|
| Q |
172 |
tgtcaactgtggattaaaataacacattgaatgc |
205 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| |
|
|
| T |
50284 |
tgtcaagtgtcagttaaaataacacgttgaatgc |
50251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 17510369 - 17510279
Alignment:
| Q |
87 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
177 |
Q |
| |
|
||||||||||| |||||| || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17510369 |
ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17510279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 17542845 - 17542935
Alignment:
| Q |
87 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
177 |
Q |
| |
|
||||||||||| |||||| || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17542845 |
ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17542935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 17474885 - 17474795
Alignment:
| Q |
87 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
177 |
Q |
| |
|
||||||||||| |||| | || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17474885 |
ttcaacattttaggggtgtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17474795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 17578329 - 17578419
Alignment:
| Q |
87 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
177 |
Q |
| |
|
||||||||||| |||| | || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17578329 |
ttcaacattttaggggtgtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17578419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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