View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_22 (Length: 224)
Name: NF8123_low_22
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 14302009 - 14301799
Alignment:
| Q |
1 |
aatttttatacactttcagcgtaannnnnnngcactgttaatctatcacagtcatcatttttgagattgctgagaactgataacttgtttgcaataaata |
100 |
Q |
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| T |
14302009 |
aatttttatacactttcagcgtaatttttttgcactgttaatctatcacagtcatcatttttgagattgctgagaactgataacttgtttgcaataaata |
14301910 |
T |
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| Q |
101 |
accttaaacattaaagttttttcaagttcaactgagaaacttggcttgttttgataccaatttcaaaggtgatgcgagaagggagagtagtgcaaagtgg |
200 |
Q |
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| T |
14301909 |
accttaaacattaaagttttttcaagttcaactgagaaacttggcttgttttgataccaatttcaaaggtgatgcgagaagggagagtagtgcaaagtgg |
14301810 |
T |
|
| Q |
201 |
aaagtatgatg |
211 |
Q |
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||||||||||| |
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| T |
14301809 |
aaagtatgatg |
14301799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 14280169 - 14280036
Alignment:
| Q |
73 |
agaactgataacttgtttgcaataaataaccttaaacattaaagttttttcaagttcaactgagaaactt-ggcttgttttgataccaatttcaaaggtg |
171 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14280169 |
agaactgataacttgtttgcaataaatagccttaaacattcaagttctttcaa------ctgagaaactttggcttgttttgataccaatttcaaaggtg |
14280076 |
T |
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| Q |
172 |
atgcgagaagggagagtagtgcaaagtggaaagtatgatg |
211 |
Q |
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| T |
14280075 |
atgcgagaagggagagtagtgcaaagtggaaagtatgatg |
14280036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 14318292 - 14318222
Alignment:
| Q |
141 |
ttggcttgttttgataccaatttcaaaggtgatgcgagaagggagagtagtgcaaagtggaaagtatgatg |
211 |
Q |
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||||||| |||||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
14318292 |
ttggcttattttgataccaactttaaaggtgatgcgtgaagggagagtagtacaaagtggaaagtatgatg |
14318222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 25883697 - 25883642
Alignment:
| Q |
156 |
accaatttcaaaggtgatgcgagaagggagagtagtgcaaagtggaaagtatgatg |
211 |
Q |
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| T |
25883697 |
accaactttaaaggtgatgcgtgaagggagagtagtgcaaagtggaaagtatgatg |
25883642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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