View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_23 (Length: 222)
Name: NF8123_low_23
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_23 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53902244 - 53902023
Alignment:
| Q |
1 |
tcatcttggttgttgcggagacggtgaaatcggaggtgatttggctttggttgaaaacattcctgatccaaaagttgaagttggaggagatggtgtggag |
100 |
Q |
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| T |
53902244 |
tcatcttggttgttgcggagacggtgaaatcggaggtgatttggctttggttgaaaacgttcctgatccaaaagttgaagttggaggagatggtgtggag |
53902145 |
T |
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| Q |
101 |
aaagttgttactgttaagcttggaaagtataggaatgttgatggtggaggggaaggaagtagcagcaacaatgtggataacagaaggtgtttttcaatgg |
200 |
Q |
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| T |
53902144 |
aaagttgttactgttaagcttggaaagtataggaatgttgatggtggaggggaaggaagtagcagcaacaatgtggataacagaaggtgtttttcaatgg |
53902045 |
T |
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| Q |
201 |
gatcatttgcttatattatgga |
222 |
Q |
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| T |
53902044 |
gatcatttgcttatattatgga |
53902023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3958239 - 3958460
Alignment:
| Q |
1 |
tcatcttggttgttgcggagacggtgaaatcggaggtgatttggctttggttgaaaacattcctgatccaaaagttgaagttggaggagatggtgtggag |
100 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3958239 |
tcatcttggttgttgcggatacggtgaattcggaggtgatttggctttggttgaaaacattcctgatccaaaagtagaagttggaggagatggtgtggag |
3958338 |
T |
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| Q |
101 |
aaagttgttactgttaagcttggaaagtataggaatgttgatggtggaggggaaggaagtagcagcaacaatgtggataacagaaggtgtttttcaatgg |
200 |
Q |
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| T |
3958339 |
aaagttattattgttaagcttggaaagtataggaatgttgctggtggaggggaaggaagtagcagcaacaatgtggataacagaaggtgtttttcaatgg |
3958438 |
T |
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| Q |
201 |
gatcatttgcttatattatgga |
222 |
Q |
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| T |
3958439 |
gatcatttgcttatattatgga |
3958460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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