View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_3 (Length: 548)
Name: NF8123_low_3
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 7980944 - 7980448
Alignment:
| Q |
18 |
ccatgacgtagcacgcctacaaagggcatgcaactcaactatatgtaaaagctttattgtgatcgaannnnnnnnnnnnnggtacaaaccggtggtttta |
117 |
Q |
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| T |
7980944 |
ccatgacgtagcacgcctacaaagggcatgcaactcaactatatgtaaaagctttattgtgatcgaatttttcattcttgggtacaaaccggtggtttta |
7980845 |
T |
|
| Q |
118 |
ttcgctatattcttcttgatttggtgcaattattttcgcnnnnnnnnng-tcaagttcagagttcgaactctaactcctgaaaatacagtagtattatac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| | || |||||||| |
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| T |
7980844 |
ttcgctatattcttcttgatttggtgcaattattttaggtttttattttatcaagttcagagttcgaatcctaactcctgaaaaga---tattattatac |
7980748 |
T |
|
| Q |
217 |
aacatccctaccaaaaattaagttcaaacaaacattattttctatattctatcggaccatattaatgtccataagtacaactgttagatattaggatcac |
316 |
Q |
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|| |||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7980747 |
aatatccttataaaaagttaagttcaaacaaacattattttctctattctatcggaccatattaatgtccataagtacaactgttagatattaggattac |
7980648 |
T |
|
| Q |
317 |
tatttatagtgatcattcattcatttgttaa-aacttcatcatattaaaaatttcaaaatttcttggaatttgctatgctttctcaacaaagatatatga |
415 |
Q |
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|||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7980647 |
tatttatagtgatcatacattcatttgtaatcaacttcttcatattaaaaatttcaaaatttcttggactttgctatgctttctcaacaaagatatatga |
7980548 |
T |
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| Q |
416 |
gctaccatccaccttgagcagataaatcatcttcattatattcctagaaaattcagttttatgtgtttgtttgaaaagatttgagagtttcttgttttct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7980547 |
gctaccatccaccttgagcagataaatcatcttcattatattcctagaaaattcagttttatgtgtttgtttgaaaagatttgagagtttcttgttttct |
7980448 |
T |
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