View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_4 (Length: 457)
Name: NF8123_low_4
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 9377937 - 9378375
Alignment:
| Q |
9 |
acatcatatctttatccaaaatcttaaaccattgagtttatggatcccatcacaatctgaatttttcttgctcaaagtttacttttctaaacaatgtgag |
108 |
Q |
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| T |
9377937 |
acatcatatctttatccaaaatcttaaaccattgagtttatggatcccatcacaatctgaattattcttgctcaaagtttacttttctaaacaatgtgag |
9378036 |
T |
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| Q |
109 |
atttctgattctcattgctccaccacaaaaagaaggatgatgtcctattgttgctacatttagatgctcctcctctctttgacgtttctcctgctttatt |
208 |
Q |
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| T |
9378037 |
atttctgattctcattgctccaccataaaaagaaggatgatgtcctattgttgctacatttagatgctcctcctctctttgacgtttctcctgctttatt |
9378136 |
T |
|
| Q |
209 |
aacaacgacatagaaggggaaacattataataaatttgtttatacaatttggagtttagtgttattcaagtaattgcaaccatcctcatccgtattg-tt |
307 |
Q |
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| T |
9378137 |
aacaacggcatagaaggggaaacaatataataagtttgtttatacaatttggagtttagtgttattcaagtaattgcaaccatcctcatccgtattgttt |
9378236 |
T |
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| Q |
308 |
ttttagttaatcctctggtttttagggaaaatgggctctgataatccggagttcggttatgaggtaaagatgatatgacctagaattgttccacacaata |
407 |
Q |
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| T |
9378237 |
ttttagttaatcctctggtttttagggaaaatgggctctgataatccggagttcggttatgaggtaaatatgatatgacctagaattgttccacacagta |
9378336 |
T |
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| Q |
408 |
atcgaactcggattct-ccgaaccatccgtccttggtga |
445 |
Q |
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| T |
9378337 |
atggaactcggattctcccgaacgatccgtccttggtga |
9378375 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 35581174 - 35581126
Alignment:
| Q |
314 |
ttaatcctctggtttttagggaaaatgggctctgataatccggagttcg |
362 |
Q |
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| T |
35581174 |
ttaatcctttggtttttagggaaaatagattctgataattcggagttcg |
35581126 |
T |
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