View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_5 (Length: 451)
Name: NF8123_low_5
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 11569795 - 11570213
Alignment:
| Q |
15 |
aagaatttaaacctaagagtgtggttgaataaatcatggtggaagaagggaacatttaccaaaaactgccgagtatcaggccaagcatttctattaaacc |
114 |
Q |
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| T |
11569795 |
aagaatttaa-cctaagagtgtggttgaataaatcatggtggaagaagggaacatttaccaaaaactgccgagtatcaggccaagcatttctattaaacc |
11569893 |
T |
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| Q |
115 |
gtttaacagcaattctcatttgattttccagcttccctttataaacaacatttggagccttctctccatgctcagatacaatattctcgacagcaaaacc |
214 |
Q |
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| T |
11569894 |
gtttaacagcaattctcatttgattttccagcttccctttataaacaacatttggagccttctctccatgctcagatacaatattctcaacagcaaaacc |
11569993 |
T |
|
| Q |
215 |
agatgttgcattcttaagttgctcgagtgtaaactcacggaacgtaggccagttattaacctcacttctatcatcattttctggaagnnnnnnnnnttaa |
314 |
Q |
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| T |
11569994 |
agatgttgcattcttaagttgctcgagtgtaaactcacggaacataggccagttactaacctcacttctatcatcattttctggaagaaaaaaaaattaa |
11570093 |
T |
|
| Q |
315 |
aataaacagatatcagaaaattccttatcaaataccaacaaattcaccaaaatatgatatgagtctacctaccagcatctggagtttcaagaaccgacgc |
414 |
Q |
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| T |
11570094 |
aataaacagatatcagaaaattccatatcaaataccaacaaattcaccaaaatatgatatgagtctacctaccagcatctggagtttcaagaaccgacgc |
11570193 |
T |
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| Q |
415 |
cttaacttgcgaattcacac |
434 |
Q |
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| T |
11570194 |
cttaacttgcgaattcacac |
11570213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 40909528 - 40909440
Alignment:
| Q |
111 |
aaccgtttaacagcaattctcatttgattttccagcttccctttataaacaacatttggagccttctctccatgctcagatacaatatt |
199 |
Q |
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| T |
40909528 |
aaccgtttgaccgcaattcgcacttgattttcaagtttccctttatagacaacatttggagccttttcaccatgctcagaaactatatt |
40909440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 29134865 - 29134695
Alignment:
| Q |
68 |
atttaccaaaaactgccgagtatcaggccaagcatttctattaaaccgtttaacagcaattctcatttgattttccagcttccctttataaacaacattt |
167 |
Q |
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| T |
29134865 |
atttaccaaaaactgacgagcatcgggccaagcacttctattaaacctcttaacaacaatcctcgtttgattctccatcttccctttataaacaacattt |
29134766 |
T |
|
| Q |
168 |
ggagccttctctccatgctcagatacaatattctcgacagcaaaaccagatgttgcattcttaagttgctc |
238 |
Q |
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| T |
29134765 |
ggagccttttctccatgttcagaaactatattctcaacattaaaaccggacgttgcattattaagttgctc |
29134695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 6424502 - 6424459
Alignment:
| Q |
147 |
ttccctttataaacaacatttggagccttctctccatgctcaga |
190 |
Q |
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| T |
6424502 |
ttccctttgtaaacaacatttggagctttctcaccatgctcaga |
6424459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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