View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_7 (Length: 442)
Name: NF8123_low_7
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 159 - 347
Target Start/End: Complemental strand, 19347378 - 19347190
Alignment:
| Q |
159 |
actttgcacttgaataccatttactatgtgatttgattcatgatcatgtaaaaccaaataaaattaaataatatacacaatttggaagactattgaaaca |
258 |
Q |
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| T |
19347378 |
actttgcacttgaataccatttactatgtgatttgattcatgatcatgtaaaacgaaataaaattaaataatatacagagtttggaagactattcaaaca |
19347279 |
T |
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| Q |
259 |
cctacnnnnnnnggttaacagtttacatccttatcacatgcacatcaaaatagagtgagtgttcggacttaaaacaaattggaaggttt |
347 |
Q |
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| T |
19347278 |
tctactttttttggtgaacagttttaatccttagcacatgcacatcaaaatagagtgagtgttcggaattataacaaattggaaggttt |
19347190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 19348175 - 19348049
Alignment:
| Q |
1 |
atcaatgttttccattaagctatctttactcccggtggagttgtgctcctttggattcaaaatcttataccttcaaatagaaaccatttcaagcttaata |
100 |
Q |
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| T |
19348175 |
atcaatgttttccattaagctatctttactcctggtggagttgcgctcctttggattcaaaatcttataccttcaaatagaaaccatttcaaacttaata |
19348076 |
T |
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| Q |
101 |
tggtcttattgataattctactactac |
127 |
Q |
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| T |
19348075 |
tggtcttattgataatcctactactac |
19348049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 19347123 - 19347046
Alignment:
| Q |
345 |
tttgtttgttagacttgttaatagaggctagtagaagtggtcatatttcatcgaaccgatgccaccttccccacccat |
422 |
Q |
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| T |
19347123 |
tttgtttgttacacttattaatagaggctagtagaagtggtcatttttcatcgaatcgatgccaccttccctacccat |
19347046 |
T |
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