View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8123_low_8 (Length: 410)

Name: NF8123_low_8
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8123_low_8
NF8123_low_8
[»] chr1 (3 HSPs)
chr1 (6-275)||(31430995-31431268)
chr1 (359-410)||(31431352-31431403)
chr1 (24-167)||(30486470-30486609)
[»] chr4 (4 HSPs)
chr4 (23-94)||(11679775-11679846)
chr4 (23-94)||(11688054-11688125)
chr4 (60-164)||(14337008-14337113)
chr4 (24-68)||(14336575-14336619)
[»] chr5 (1 HSPs)
chr5 (49-166)||(35669951-35670069)
[»] chr8 (1 HSPs)
chr8 (71-167)||(32134343-32134437)
[»] chr3 (2 HSPs)
chr3 (12-153)||(927963-928106)
chr3 (24-93)||(1555515-1555584)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 31430995 - 31431268
Alignment:
Q  6 agtgagatgaaacaaatgataaaatgaattgtagattaaccaaagacatttacttatataaaatgtggtgtaatattatccacataaatgtttggtgctt 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  31430995 agtgaaatgaaacaaatgataaaatgaattgtagattaaccaaagacatttacttatataaaatatggtgcaatattatccacataaatgtttgatgctt 31431094  T
Q  106 tgtagaccacgtgaaacataaaagacatatatttatataagttagtgatatattggccacac---nnnnnnntatcggtgcattattgaccac-aaaaaa 201  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||| ||||||    
T  31431095 tgtagaccacgtgaaacataaaagatatatatttatataagttagtgatatataggccacacaaaaaaaaaatatcggtgcattattgaccacaaaaaaa 31431194  T
Q  202 tatgttggtgcattatcatccataaaagtatgaacgacaacaaaaaattgtcaaagcccttctagtaaaattgt 275  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31431195 tatgttcgtgcattatcaaccataaaagtatgaacgacaataaaaaattgtcaaagcccttctagtaaaattgt 31431268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 31431352 - 31431403
Alignment:
Q  359 gttgctcacctttttcaatatccaaaaaagcttcttcttaggtctcagcttc 410  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31431352 gttgctcacctttttcaatatccaaaaaagcttcttcttatgtctcagcttc 31431403  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 30486609 - 30486470
Alignment:
Q  24 ataaaatgaattgtagattaaccaaagacatttacttatataaaatgtggtgtaatattatccacataaatgtttggtgctttgtagaccacgtgaaaca 123  Q
    |||||||||| |||||||| || |||||||| || ||||||     |||||  |||||||||| |||||||  | ||||| ||||  ||||| | |||||    
T  30486609 ataaaatgaaatgtagattcactaaagacatatatttatat-----gtggttcaatattatccgcataaattgtcggtgcattgtgcaccacataaaaca 30486515  T
Q  124 taaaagacatatatttatataa-gttagtgatatattggccacac 167  Q
    |||||||||||||||||||||| | || ||||||||||| |||||    
T  30486514 taaaagacatatatttatataatgctaatgatatattggtcacac 30486470  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 11679846 - 11679775
Alignment:
Q  23 gataaaatgaattgtagattaaccaaagacatttacttatataaaatgtggtgtaatattatccacataaat 94  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||||||||| ||||||||| ||||||||    
T  11679846 gataaaatgaattgtagattaaccgaatacattaatttatataaaatgtggtgcaatattatcaacataaat 11679775  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 11688125 - 11688054
Alignment:
Q  23 gataaaatgaattgtagattaaccaaagacatttacttatataaaatgtggtgtaatattatccacataaat 94  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||||||||| ||||||||| ||||||||    
T  11688125 gataaaatgaattgtagattaaccgaatacattaatttatataaaatgtggtgcaatattatcaacataaat 11688054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 14337008 - 14337113
Alignment:
Q  60 tatataaaatgtggtgtaatattatccacataaatgtttggtgctttgtagaccacgtgaaacataaaagacatatatttatataa-gttagtgatatat 158  Q
    |||||||||||||||| ||||||||||| |||||   |||||| |||||  ||||||| |||  ||||||||||||||||||| || |||| || |||||    
T  14337008 tatataaaatgtggtgcaatattatccatataaactattggtgttttgtccaccacgtaaaatttaaaagacatatatttatacaatgttaatggtatat 14337107  T
Q  159 tggcca 164  Q
    ||||||    
T  14337108 tggcca 14337113  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 14336575 - 14336619
Alignment:
Q  24 ataaaatgaattgtagattaaccaaagacatttacttatataaaa 68  Q
    |||||||||||||||||||||||| |||||| || ||||||||||    
T  14336575 ataaaatgaattgtagattaaccagagacatatatttatataaaa 14336619  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 35670069 - 35669951
Alignment:
Q  49 agacatttacttatataaaatgtggtgtaatattatccacataaatgtttggtgctttgtagaccacgtgaaacataaaagacatatatttatataa-gt 147  Q
    |||||| || ||||||  || |||||| |||||||||||||||||   | ||||||||||  ||||| | ||||||||||||||| ||||||||||| ||    
T  35670069 agacatatatttatattgaacgtggtgcaatattatccacataaactgtcggtgctttgtccaccacataaaacataaaagacatctatttatataatgt 35669970  T
Q  148 tagtgatatattggccaca 166  Q
    ||||||| |||| ||||||    
T  35669969 tagtgatgtatttgccaca 35669951  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 32134343 - 32134437
Alignment:
Q  71 tggtgtaatattatccacataaatgtttggtgctttgtagaccacgtgaaacataaaagacatatatttatataa-gttagtgatatattggccacac 167  Q
    ||||| ||||||||||||||||||  ||| ||  ||||| ||||| | |||||||||||||||   ||||||||| ||||||||||||||| ||||||    
T  32134343 tggtgcaatattatccacataaattattgatgtattgtacaccacataaaacataaaagacat---tttatataacgttagtgatatattgaccacac 32134437  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 928106 - 927963
Alignment:
Q  12 atgaaacaaatgataaaatgaattgtagattaaccaaagacatttacttatataaaatgtggtgtaatattatccacataaatgtttggtgctttgtaga 111  Q
    |||||||||| |||||||| || |||||||| |  | |||||| || ||||||||||||| | | ||| ||||||||||||||  | | |||||| |  |    
T  928106 atgaaacaaaagataaaataaaatgtagattgattagagacatatatttatataaaatgttgggcaattttatccacataaattgtcgttgctttttcca 928007  T
Q  112 ccacgtgaaacataaa-agacatatatttatataa-gttagtga 153  Q
    |||  | ||||||||| | |||||||||||||||| ||||||||    
T  928006 ccatataaaacataaagaaacatatatttatataatgttagtga 927963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 1555584 - 1555515
Alignment:
Q  24 ataaaatgaattgtagattaaccaaagacatttacttatataaaatgtggtgtaatattatccacataaa 93  Q
    ||||||||||||||| ||||||   |||||| || |||||||||||   ||| |||||||||||||||||    
T  1555584 ataaaatgaattgtatattaactggagacatatatttatataaaatacagtgcaatattatccacataaa 1555515  T

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