View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8123_low_9 (Length: 376)
Name: NF8123_low_9
Description: NF8123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8123_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 9400144 - 9400503
Alignment:
| Q |
16 |
acatcatatatggttcaattaaattaagaacaagaaaatagaataacctttttggtacatgaaaacaaaatctaatctaaatatgtcaataaactgttgc |
115 |
Q |
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| T |
9400144 |
acatcatatatggttcaattaaattaagaacaagaaaatagaataacctttttggtacatgacaacaaaatctaatctaaatatgtcaataaactgttgc |
9400243 |
T |
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| Q |
116 |
tttctacacacaattgagaattatcaaataaattgctccaatatttatatccaaggaaactaagacggagaccaccaatccaacttcagtttacactatc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9400244 |
tttctacacacaattgagaattatcaaataaattgcttcaatatttatatccaaggaaactaagacggagaccaccaattcaacttcagtttacactatc |
9400343 |
T |
|
| Q |
216 |
aannnnnnnnnnnnnnnnngaatcggcaaaattaat---gataggccacctaccggaacaagttgtaacaaggagggctagaagaatacaaaactgatgc |
312 |
Q |
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|| ||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400344 |
aattttattttttatttttgaatcggcaaaattaataccgataggccacttaccagaacaagttgtaacaaggagggctagaagaatacaaaactgatgc |
9400443 |
T |
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| Q |
313 |
atcaagactcgactaggaatgtcagcaaacaggaaaagaaaaagataaagccaaagcaaa |
372 |
Q |
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| T |
9400444 |
atcaagactcgactaggaatgtcagcaaacaggaaaataaaaagataaagctaaagcaaa |
9400503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 9418707 - 9419064
Alignment:
| Q |
16 |
acatcatatatggttcaattaaattaagaacaagaaaatagaataacc-tttttggtacatgaaaacaaaatctaatctaaatatgtcaataaactgttg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
9418707 |
acatcatatatggttcaattaaattaagaacaagaaaatagaataaccctttttggtacatgaaaacaaaatctaat--aaatatgtcaataaactgctg |
9418804 |
T |
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| Q |
115 |
ctttctacacacaattgagaattatcaaataaattgctccaatatttatatccaaggaaactaagacggagaccaccaatccaacttcagtttacactat |
214 |
Q |
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| T |
9418805 |
ctttctacacacaattgagaattatcaaataaattgcttcaatatttatatccaaggaaactaagacggagatcaccaattcaacttcagtttacaccat |
9418904 |
T |
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| Q |
215 |
caannnnnnnnnnnnnnnnngaatcggcaaaattaa---tgataggccacctaccggaacaagttgtaacaaggagggctagaagaatacaaaactgatg |
311 |
Q |
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||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9418905 |
caattttattttttatttttgaatcggcaaaattaatactgataggccacttaccggaacaagttgtaacaaggagggctaaaagaatacaaaactgatg |
9419004 |
T |
|
| Q |
312 |
catcaagactcgactaggaatgtcagcaaacaggaaaagaaaaagataaagccaaagcaaa |
372 |
Q |
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| T |
9419005 |
catcaagactcgactaggaatgtcagcaaacagg-aaagaaaaagataaagccaaagcaaa |
9419064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 235 - 372
Target Start/End: Original strand, 9410248 - 9410388
Alignment:
| Q |
235 |
gaatcggcaaaattaat---gataggccacctaccggaacaagttgtaacaaggagggctagaagaatacaaaactgatgcatcaagactcgactaggaa |
331 |
Q |
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||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
9410248 |
gaatcagcaaaattaataccgataggccacttaccggaacaagttgtaacaaggagggctagaggaatacaaaactgatgcatcaagactcgactaggca |
9410347 |
T |
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| Q |
332 |
tgtcagcaaacaggaaaagaaaaagataaagccaaagcaaa |
372 |
Q |
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| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
9410348 |
tatcaacaaacaggaaatgaaaaagataaagccaaagcaaa |
9410388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 9409620 - 9409703
Alignment:
| Q |
16 |
acatcatatatggttcaattaaattaagaacaagaaaatagaataacctttttggtacatgaaaacaaaatctaatctaaatat |
99 |
Q |
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| T |
9409620 |
acatcctatatgattcaattaatataagaacaagaaaatagaataacctttttgatacattaaaataaaatataatctaaatat |
9409703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 9430938 - 9431021
Alignment:
| Q |
16 |
acatcatatatggttcaattaaattaagaacaagaaaatagaataacctttttggtacatgaaaacaaaatctaatctaaatat |
99 |
Q |
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| T |
9430938 |
acatcctatatgattcagttaatataagaacaagaaaatagaataacctttttgatacattaaaataaaatataatctaaatat |
9431021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 9451288 - 9451348
Alignment:
| Q |
121 |
acacacaattgagaattatcaaataaattgctccaatatttatatccaaggaaactaagac |
181 |
Q |
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| T |
9451288 |
acacacaattgagaattgccaaataaattgctccaatttttatatcaaaggaaactaagac |
9451348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 4431545 - 4431595
Alignment:
| Q |
22 |
tatatggttcaattaaattaagaacaagaaaatagaataacctttttggta |
72 |
Q |
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|||||| |||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
4431545 |
tatatgattcaattaaaataagaactagaaaatagaataactattttggta |
4431595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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