View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8124_high_1 (Length: 784)

Name: NF8124_high_1
Description: NF8124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8124_high_1
NF8124_high_1
[»] chr2 (13 HSPs)
chr2 (148-771)||(40451436-40452059)
chr2 (287-368)||(40275820-40275904)
chr2 (19-51)||(7511361-7511393)
chr2 (19-59)||(13236986-13237026)
chr2 (19-51)||(22265375-22265407)
chr2 (80-118)||(13237002-13237040)
chr2 (80-118)||(22423008-22423046)
chr2 (80-118)||(25890794-25890832)
chr2 (80-118)||(28192544-28192582)
chr2 (80-118)||(35741292-35741330)
chr2 (80-118)||(39615830-39615868)
chr2 (80-118)||(40452089-40452127)
chr2 (80-118)||(42336055-42336093)
[»] chr4 (11 HSPs)
chr4 (503-557)||(31219136-31219190)
chr4 (80-118)||(6810717-6810755)
chr4 (80-118)||(13578908-13578946)
chr4 (80-118)||(17494802-17494840)
chr4 (80-118)||(19495658-19495696)
chr4 (80-118)||(22324440-22324478)
chr4 (80-118)||(23483972-23484010)
chr4 (80-118)||(23962702-23962739)
chr4 (80-118)||(47283629-47283667)
chr4 (80-117)||(11347218-11347255)
chr4 (80-117)||(12294364-12294401)
[»] chr7 (15 HSPs)
chr7 (80-118)||(11468883-11468921)
chr7 (458-558)||(14729362-14729462)
chr7 (19-59)||(23774965-23775005)
chr7 (448-548)||(14740901-14741001)
chr7 (80-118)||(3224297-3224335)
chr7 (80-118)||(9712641-9712679)
chr7 (80-118)||(18318464-18318502)
chr7 (80-118)||(28311352-28311390)
chr7 (80-118)||(31644187-31644225)
chr7 (84-118)||(37101311-37101345)
chr7 (80-118)||(43991423-43991461)
chr7 (80-118)||(46483622-46483660)
chr7 (80-118)||(47532784-47532822)
chr7 (80-118)||(48741830-48741868)
chr7 (80-117)||(24932200-24932237)
[»] chr5 (8 HSPs)
chr5 (458-558)||(17594025-17594125)
chr5 (19-51)||(21000593-21000625)
chr5 (80-118)||(5081475-5081513)
chr5 (80-118)||(11762495-11762533)
chr5 (80-118)||(13079691-13079729)
chr5 (80-118)||(18618258-18618296)
chr5 (80-118)||(25591226-25591264)
chr5 (19-57)||(38941460-38941498)
[»] scaffold0559 (1 HSPs)
scaffold0559 (80-118)||(3198-3236)
[»] scaffold0009 (1 HSPs)
scaffold0009 (80-118)||(7337-7375)
[»] chr8 (4 HSPs)
chr8 (80-118)||(40774095-40774133)
chr8 (80-118)||(21127322-21127360)
chr8 (80-118)||(37715330-37715368)
chr8 (84-117)||(34617971-34618004)
[»] chr1 (6 HSPs)
chr1 (80-118)||(29641592-29641630)
chr1 (80-118)||(1340682-1340720)
chr1 (80-118)||(1819330-1819368)
chr1 (80-118)||(9403568-9403606)
chr1 (80-118)||(13430496-13430534)
chr1 (80-118)||(32116175-32116213)
[»] scaffold0555 (1 HSPs)
scaffold0555 (80-118)||(6685-6723)
[»] scaffold0090 (1 HSPs)
scaffold0090 (80-118)||(15613-15651)
[»] chr6 (7 HSPs)
chr6 (80-118)||(9887899-9887937)
chr6 (80-118)||(10739002-10739040)
chr6 (80-118)||(26908500-26908538)
chr6 (80-118)||(32276110-32276148)
chr6 (80-118)||(34204990-34205028)
chr6 (80-117)||(1414836-1414873)
chr6 (80-117)||(34204745-34204782)
[»] chr3 (7 HSPs)
chr3 (80-118)||(13207490-13207528)
chr3 (80-118)||(21015240-21015278)
chr3 (80-118)||(24234254-24234292)
chr3 (80-118)||(37585882-37585920)
chr3 (80-118)||(40003875-40003913)
chr3 (80-118)||(40641259-40641297)
chr3 (80-118)||(53035866-53035904)


Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 148 - 771
Target Start/End: Complemental strand, 40452059 - 40451436
Alignment:
Q  148 aaacttagcattaagttgagtgaccaatcccattgttcatcatcaacaggacctaattgaagccagggcaatgcctgaatggattcgtccaacatttgaa 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  40452059 aaacttagcattaagctgagtgaccaatcccattgttcatcatcaacaggacctaattgaagccagggtaatgcctgaatggactcgtccaacatttgaa 40451960  T
Q  248 ttgttatcaccagatttgaacatgagacctagaaagatgagcagcaacatggtgtccaaagatgtccaccatcttccataccttttcttgggcaatcaag 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40451959 ttgttatcaccagatttgaacatgagacctagaaagatgagcagcaacatggtgtccaaagatgtccaccatcttccataccttttcttgggcaatcaag 40451860  T
Q  348 catatctcatcaatgaatcattacacgaaaagatgaaaaatctcatcaatgaatcatcatcactcaaaatggagaaaaatattagtgacttacccgataa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40451859 catatctcatcaatgaatcattacacgaaaagatgaaaaatctcatcaatgaatcatcatcactcaaaatggagaaaaatattagtgacttacccgataa 40451760  T
Q  448 cattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtc 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40451759 cattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtc 40451660  T
Q  548 tatgattttcatattattagtccttctcattctcaaaatcaaaactcagcaacaccaaattctcttttaggtttagtcaccacactacttcacaaatcta 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40451659 tatgattttcatattattagtccttctcattctcaaaatcaaaactcagcaacagcaaattctcttttaggtttagtcaccacactacttcacaaatcta 40451560  T
Q  648 atgtagaaatacaaagcctcgccattaaaataacacctcgagttatttttgatgcacacaatcatttttctcgactatcagttactcttgttgcacgcaa 747  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40451559 atgtagaaatacaaagcctcgccattgaaataacacctcgagttatttgggatgcacacaatcatttttctcgactatcagttactcttgatgcacgcaa 40451460  T
Q  748 actcacttctttactatcttctct 771  Q
    ||| ||||||||||||||||||||    
T  40451459 acttacttctttactatcttctct 40451436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 40275820 - 40275904
Alignment:
Q  287 agcagcaacatggtgtccaaagatgtccaccatctt---ccataccttttcttgggcaatcaagcatatctcatcaatgaatcat 368  Q
    ||||||| | |||||||||| |||||||| ||||||   ||||||||| | ||||| | | ||||||||||||||||||||||||    
T  40275820 agcagcagcttggtgtccaatgatgtccatcatcttcttccataccttgttttggggagtaaagcatatctcatcaatgaatcat 40275904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 7511361 - 7511393
Alignment:
Q  19 tttcacccctataatatatgtcatttctggttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  7511361 tttcacccctataatatatgtcatttctggttt 7511393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 13237026 - 13236986
Alignment:
Q  19 tttcacccctataatatatgtcatttctggtttgatttgca 59  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  13237026 tttcacccctgtaatatatgtcatttccggtttgatttgca 13236986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 22265407 - 22265375
Alignment:
Q  19 tttcacccctataatatatgtcatttctggttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  22265407 tttcacccctataatatatgtcatttctggttt 22265375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 13237002 - 13237040
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  13237002 aatgacatatattacaggggtgaaaagcactattaaccc 13237040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 22423008 - 22423046
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  22423008 aatgacatatattacagtggtgaaaagcactattaaccc 22423046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 25890794 - 25890832
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  25890794 aatgacatatattacagaggttaaaaacactattaaccc 25890832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 28192544 - 28192582
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  28192544 aatgacatatattacaggggtgaaaagcactattaaccc 28192582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 35741292 - 35741330
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  35741292 aatgacatatattacatgggtaaaaagcactattaaccc 35741330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 39615830 - 39615868
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  39615830 aatgacatatattacagaggtgaaaaacactattaaccc 39615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 40452127 - 40452089
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  40452127 aatgacatatattacagaggtgaaaaggactattaaccc 40452089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 42336055 - 42336093
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  42336055 aatgacatatattacaggggtaaaaaacactattaaccc 42336093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 503 - 557
Target Start/End: Complemental strand, 31219190 - 31219136
Alignment:
Q  503 atattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc 557  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  31219190 atattagcaacaaagtggagatacttgtggacccaattacccgtctttgattttc 31219136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 6810717 - 6810755
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  6810717 aatgacatatattacaggggtgaaaagcactattaaccc 6810755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 13578908 - 13578946
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  13578908 aatgacatatattacagaggtgaaaaacactattaaccc 13578946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 17494840 - 17494802
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  17494840 aatgacatatattactgaggtgaaaagcactattaaccc 17494802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 19495658 - 19495696
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  19495658 aatgacatatattacaggggtgaaaagcactattaaccc 19495696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 22324478 - 22324440
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  22324478 aatgacatatattacaggggtgaaaagcactattaaccc 22324440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 23483972 - 23484010
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  23483972 aatgacatatattacaggggtgaaaagcactattaaccc 23484010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 23962739 - 23962702
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23962739 aatgacatatattaca-aggtaaaaagcactattaaccc 23962702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 47283629 - 47283667
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  47283629 aatgacatatattacaggggtgaaaagcactattaaccc 47283667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 11347255 - 11347218
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaacc 117  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  11347255 aatgacatatattacaggggtgaaaagcactattaacc 11347218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 12294401 - 12294364
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaacc 117  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  12294401 aatgacatatattacaggggtgaaaagcactattaacc 12294364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 11468921 - 11468883
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11468921 aatgacatatattacagaggtaaaaagcactattaaccc 11468883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 558
Target Start/End: Complemental strand, 14729462 - 14729362
Alignment:
Q  458 catattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc 557  Q
    ||||||||||| || ||| | || || |||||||| | ||| ||||||||||| ||||||||||  ||||||||||| || |||||| ||| ||||||||    
T  14729462 catattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatccatctttgattttc 14729363  T
Q  558 a 558  Q
    |    
T  14729362 a 14729362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23774965 - 23775005
Alignment:
Q  19 tttcacccctataatatatgtcatttctggtttgatttgca 59  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  23774965 tttcacccctgtaatatatgtcatttctggtttgatttgca 23775005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 548
Target Start/End: Complemental strand, 14741001 - 14740901
Alignment:
Q  448 cattcttcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtc 547  Q
    |||||||||  |||||||||| || ||||| ||||| || || || | ||| || |||||| || |||||||||| ||||||||||| |||||||| |||    
T  14741001 cattcttcattatattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatctgtc 14740902  T
Q  548 t 548  Q
    |    
T  14740901 t 14740901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 3224297 - 3224335
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  3224297 aatgacctatattacagaggtgaaaagcactattaaccc 3224335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 9712641 - 9712679
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  9712641 aatgacatatattacagaggtgaaaaacactattaaccc 9712679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 18318502 - 18318464
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  18318502 aatgacatatattacaggggtgaaaagcactattaaccc 18318464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 28311352 - 28311390
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  28311352 aatgacatatattacaggggtgaaaagcactattaaccc 28311390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 31644187 - 31644225
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  31644187 aatgacatatattacagaggtgaaaaacactattaaccc 31644225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 37101345 - 37101311
Alignment:
Q  84 acatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| |||||||||||||||||    
T  37101345 acatatattacagaggtgaaaagcactattaaccc 37101311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 43991423 - 43991461
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  43991423 aatgacatatattacagagataaaaaacactattaaccc 43991461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 46483660 - 46483622
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  46483660 aatgacatatattacagaggtgaaaaacactattaaccc 46483622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 47532822 - 47532784
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  47532822 aatgacatatattacaggggtgaaaagcactattaaccc 47532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 48741830 - 48741868
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  48741830 aatgacatatattacaggggtgaaaagcactattaaccc 48741868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 24932200 - 24932237
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaacc 117  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  24932200 aatgacatatattacaggggtgaaaagcactattaacc 24932237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 558
Target Start/End: Original strand, 17594025 - 17594125
Alignment:
Q  458 catattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc 557  Q
    ||||||||||| || ||| | || || |||||||| | ||| ||||||||||| ||||||||||  ||||||||||| || |||||| ||| ||||||||    
T  17594025 catattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatccatctttgattttc 17594124  T
Q  558 a 558  Q
    |    
T  17594125 a 17594125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 21000625 - 21000593
Alignment:
Q  19 tttcacccctataatatatgtcatttctggttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  21000625 tttcacccctataatatatgtcatttctggttt 21000593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 5081513 - 5081475
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  5081513 aatgacatatattacaggggtgaaaagcactattaaccc 5081475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 11762495 - 11762533
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  11762495 aatgacatatattacaggggtgaaaagcactattaaccc 11762533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 13079691 - 13079729
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  13079691 aatgacatatattacaggggtgaaaagcactattaaccc 13079729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 18618296 - 18618258
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  18618296 aatgacatatattacaggggtgaaaagcactattaaccc 18618258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 25591226 - 25591264
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  25591226 aatgacatatattacaggggtgaaaagcactattaaccc 25591264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 38941460 - 38941498
Alignment:
Q  19 tttcacccctataatatatgtcatttctggtttgatttg 57  Q
    |||||||||||||||||||||||||| || |||||||||    
T  38941460 tttcacccctataatatatgtcatttttgatttgatttg 38941498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 3236 - 3198
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3236 aatgacatatattacagaggtgaaaagcactattaaccc 3198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 7375 - 7337
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7375 aatgacatatattacagaggtaaaaagcacaattaaccc 7337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 40774095 - 40774133
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  40774095 aatgacatatattacagaggtgaaaagcactattaaccc 40774133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 21127360 - 21127322
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  21127360 aatgacatatattacagaggtgaaaaacactattaaccc 21127322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 37715330 - 37715368
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  37715330 aatgacatatattacaggggtgaaaagcactattaaccc 37715368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 34618004 - 34617971
Alignment:
Q  84 acatatattacagaggtaaaaagcactattaacc 117  Q
    ||||||||||||| ||||||||||||||||||||    
T  34618004 acatatattacaggggtaaaaagcactattaacc 34617971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 29641630 - 29641592
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  29641630 aatgacatatattacagaggtgaaaagcactattaaccc 29641592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 1340720 - 1340682
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  1340720 aatgacatatattacaggggtgaaaagcactattaaccc 1340682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 1819330 - 1819368
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  1819330 aatgacatatattacagaggtgaaaaacactattaaccc 1819368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 9403568 - 9403606
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  9403568 aatgacatatattacaggggtgaaaagcactattaaccc 9403606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 13430496 - 13430534
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  13430496 aatgacatatattacaggggtgaaaagcactattaaccc 13430534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 32116213 - 32116175
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  32116213 aatgacatatattacaggggtgaaaagcactattaaccc 32116175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 6723 - 6685
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  6723 aatgacatatattacaggggtaaaaaacactattaaccc 6685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 15613 - 15651
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  15613 aatgacatatattacaggggtgaaaagcactattaaccc 15651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 9887899 - 9887937
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  9887899 aatgacatatattacagaggtgaaaaacactattaaccc 9887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 10739002 - 10739040
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  10739002 aatgacatatattacaggggtgaaaagcactattaaccc 10739040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 26908500 - 26908538
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26908500 aatgacatatattacaggggtgaaaagcactattaaccc 26908538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 32276148 - 32276110
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  32276148 aatgacatatattacaggggtgaaaagcactattaaccc 32276110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 34204990 - 34205028
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    |||||||||||||| || |||||||||||||||||||||    
T  34204990 aatgacatatattataggggtaaaaagcactattaaccc 34205028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 1414836 - 1414873
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaacc 117  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  1414836 aatgacatatattacaggggtgaaaagcactattaacc 1414873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 34204782 - 34204745
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaacc 117  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  34204782 aatgacatatattacagaggtgaaaaacactattaacc 34204745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 13207528 - 13207490
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  13207528 aatgacatatattacagaggtgaaaaacactattaaccc 13207490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 21015278 - 21015240
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  21015278 aatgacatatattacaggggtgaaaagcactattaaccc 21015240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 24234254 - 24234292
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  24234254 aatgacatatattacagaggtgaaaaacactattaaccc 24234292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 37585882 - 37585920
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  37585882 aatgacatatattacaggggtgaaaagcactattaaccc 37585920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 40003913 - 40003875
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  40003913 aatgacatatattacaggggtgaaaagcactattaaccc 40003875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 40641297 - 40641259
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  40641297 aatgacctatattacaggggtaaaaagcactattaaccc 40641259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 53035866 - 53035904
Alignment:
Q  80 aatgacatatattacagaggtaaaaagcactattaaccc 118  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  53035866 aatgacatatattacagaggtgaaaaacactattaaccc 53035904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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