View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8124_high_5 (Length: 278)
Name: NF8124_high_5
Description: NF8124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8124_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 35 - 264
Target Start/End: Complemental strand, 46702015 - 46701786
Alignment:
| Q |
35 |
aatattgtacttgtgtatttaggaagtattgaaaatcagaaaagcaattgtctcaattgatccttacctactacacatttccttctcacacttttgcaat |
134 |
Q |
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| T |
46702015 |
aatattatacctgtgtttttaggaagtattgaaaatcagaaaagcaattgtctcaattgatccctaccttctacacatttccttctcacacttttgcaat |
46701916 |
T |
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| Q |
135 |
tgattttgttggtcgatatgcattatatagttggcccgtcacaatagtgaatcttcggtgcaaatataaattctatcatataaagatgtgaaagaaagtc |
234 |
Q |
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| T |
46701915 |
tgattttgttggtcgatatgcattatatagttggcccgtcacaatagtgaatcttcggtgcaaatataaattctatcatataaagatgtgaaagaaagtc |
46701816 |
T |
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| Q |
235 |
ttttaagagaacaatcaagggtttattcat |
264 |
Q |
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| T |
46701815 |
ttttaagagaacaatcaagggtttattcat |
46701786 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 12075912 - 12075863
Alignment:
| Q |
37 |
tattgtacttgtgtatttaggaagtattgaaaatcagaaaagcaattgtc |
86 |
Q |
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| T |
12075912 |
tattttacttgtgtttttaggaagtattgaaagtcagaaaagcaattgtc |
12075863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 34123594 - 34123543
Alignment:
| Q |
35 |
aatattgtacttgtgtatttaggaagtattgaaaatcagaaaagcaattgtc |
86 |
Q |
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| T |
34123594 |
aatattttacttgtgtttttaggaagtattgaaagtcagaacaacaattgtc |
34123543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 6979044 - 6979094
Alignment:
| Q |
37 |
tattgtacttgtgtatttaggaagtattgaaaatcagaaaagcaattgtct |
87 |
Q |
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| T |
6979044 |
tattttacttgtgtttttagaaagtattaaaagtcagaaaagcaattgtct |
6979094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 21166421 - 21166373
Alignment:
| Q |
37 |
tattgtacttgtgtatttaggaagtattgaaaatcagaaaagcaattgtc |
86 |
Q |
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| T |
21166421 |
tattttacttgtgtttttaggaagtattg-aagtcagaaaagcaattgtc |
21166373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 29240628 - 29240595
Alignment:
| Q |
54 |
taggaagtattgaaaatcagaaaagcaattgtct |
87 |
Q |
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| T |
29240628 |
taggaagtattgaaagtcagaaaagcaattgtct |
29240595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 11459775 - 11459728
Alignment:
| Q |
37 |
tattgtacttgtgtatttaggaagtattgaaaatcagaaaagcaattgt |
85 |
Q |
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|||| ||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
11459775 |
tattttacttgtgtttttagga-gtattgaaagtcagaaaagcaattgt |
11459728 |
T |
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