View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8124_low_5 (Length: 395)
Name: NF8124_low_5
Description: NF8124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8124_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 30054519 - 30054898
Alignment:
| Q |
15 |
agagacagtcaatgatttgatattagaaaactagtagtagccagttgagtaggactgcagattcatcttccaacgggcgatt---gaatccgatgtctgc |
111 |
Q |
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| T |
30054519 |
agagacagtcaatgatttgatattagaaaact-gtagtagccagttgagtaggactgcagattcgtcttccaaggggcgattaatgaatccgatgtctgc |
30054617 |
T |
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| Q |
112 |
atccttgtaaacgtgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
211 |
Q |
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| T |
30054618 |
atccatgtaaacatgtttaacagaacaaagatggatatggcatggtttttggttgagagatccaataaaagaaaagttggaaagcaaatgagcagatatg |
30054717 |
T |
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| Q |
212 |
ttgcacatcaaactagcat---------atccatac------atagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcctccacaa |
296 |
Q |
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| T |
30054718 |
ttgccaatcaaactagcattggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcctccacaa |
30054817 |
T |
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| Q |
297 |
gtataaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaa |
377 |
Q |
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| T |
30054818 |
gtctaaaactttcaatgaccaaagtattcaaccatcatcgccagcgcgaaagtggaagaaccttacagccaaggtggttaa |
30054898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 45906383 - 45906437
Alignment:
| Q |
235 |
atacatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctgcatcc |
289 |
Q |
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| T |
45906383 |
atacatagttaaattgacaagtgttccacttgatatgcaaagggtttttgcatcc |
45906437 |
T |
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