View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8125_high_15 (Length: 221)
Name: NF8125_high_15
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8125_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 36878206 - 36878355
Alignment:
| Q |
55 |
ttactaacaacaccctctcatctt----tctcttacataaaacactaatcaagaagaatcgcagaagctgaaaaagaaaacgagcgaaaatggaagggat |
150 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36878206 |
ttactaacaacaccctctcatctttctttctcttacataaaacactaatcaagaagaatcgcagaagctgaaaaagaaaacgagcgaaaatggaagggat |
36878305 |
T |
|
| Q |
151 |
tgaaggagaacgaagcagctacaaactccaaccctcacgaatcaacaacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36878306 |
tgaaggagaacgaagcagctacaaactccaaccctcacgaatcaataacg |
36878355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University