View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8125_high_2 (Length: 457)
Name: NF8125_high_2
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8125_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 11401796 - 11401368
Alignment:
| Q |
17 |
acaacggactacaagacaccctttatataggctagctttccttacataatgaataaacctaatcactaagatataatgaagagacggttcagatatttta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
11401796 |
acaacggactacaagacaccctttatataggctaggtttccttacataatgaataaacctaatcactaagatataatgaagaggcgtttcagataattta |
11401697 |
T |
|
| Q |
117 |
ataaagatagtcttgcatgtaagcaagatacatgcttgatggctaagtttcttacaagtaaagataaaacaaacggtgctccttatcttcaagtggtcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11401696 |
ataaagatagtcttgcatgtaagcaagatacatgcttgatggctaagtttcttacaagtaaagataaaacaaacggtgctccttatcttcaagtggtcca |
11401597 |
T |
|
| Q |
217 |
gtagtatcatcatttcttaatggtgaagacttgtcttctagaatgcttctaaaatcttctagtttatgcttgatttaattttcttacagttgtcatttgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11401596 |
gtagtatcatcatttcttaatggtgaagacttgtcttctggaatgcttctaaaatcttctagtttatgcttgatttaattttcttacggttgtcatttgt |
11401497 |
T |
|
| Q |
317 |
cattgttgatattgtttgtgtgacctgtcttgacataatattttgcaattaactgaaatttcttttgcacacgttggtgttgactaattgtgtatttcat |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11401496 |
cattgtttatattgtttgtgtgacctgtcttgacataatattttaaaattaactgaaatttcttttgcacacgttggtgttgactaattgtgtatttcat |
11401397 |
T |
|
| Q |
417 |
aaaattccatcagaacatcaaggtttctt |
445 |
Q |
| |
|
|||||||||||| | |||||||||||||| |
|
|
| T |
11401396 |
aaaattccatcaaagcatcaaggtttctt |
11401368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University