View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8125_low_1 (Length: 644)
Name: NF8125_low_1
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8125_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 79 - 362
Target Start/End: Complemental strand, 3222081 - 3221787
Alignment:
| Q |
79 |
caagtgatgagtagacatgatgtgtgtgttgataggtggaacttgggagtttaaggtagctaggtagcaagtcaaaggagaggcaaacagacgaaaatga |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3222081 |
caagtgatgagtagacatgatgtgtgtgttgataggtggaacttgggagtttaaggtag----gtagcaagtcaaaggagaggcaaacagacgaaaatga |
3221986 |
T |
|
| Q |
179 |
catctctaaagattcccactaatggatgaatggcatatttcgaactacttgagattctttcttccataatattatatatagtatgtgttttgttttcagt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3221985 |
catctctaaagattcccactaatggatgaatggcatatttcaaactacttgagattcttccttcc---atattatatatagtatgtgttttgttttcagt |
3221889 |
T |
|
| Q |
279 |
ggctgccttaacatggacgcacg------------------tttatagcttctccattttcacggtaaaatgcatcaaaattagcagtgaaatgagtatt |
360 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
3221888 |
ggctgccttaacatggacgcacgttctgttagaagctacaatttatagcttctccattttcacagtaaaatgcatcaaaatttgcagtgaaatgtgtatt |
3221789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 3186435 - 3186498
Alignment:
| Q |
151 |
caaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcat |
214 |
Q |
| |
|
||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
3186435 |
caaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcat |
3186498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 447 - 569
Target Start/End: Complemental strand, 1140758 - 1140636
Alignment:
| Q |
447 |
ttgaaattaattaaaaatccaaactgcataatataactacccataaccccctcaaacacacttcacttcataacatggtttctaaataacaaaagcgttg |
546 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
1140758 |
ttgaaattaatataaaatctaaactgcatagtataaccaccgataaccccctcaaacacacttcacttcataacatggtttctataaaacaaaagcgttg |
1140659 |
T |
|
| Q |
547 |
cataccaatcatatcccacctct |
569 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1140658 |
cataccaatcatatcccacctct |
1140636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 583 - 630
Target Start/End: Complemental strand, 1140577 - 1140530
Alignment:
| Q |
583 |
ttttgatataactgtttctttctttctaactatttggttgtcattgat |
630 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1140577 |
ttttaatataaatgtttctttctttataactatttggttgtcattgat |
1140530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University