View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8125_low_12 (Length: 241)

Name: NF8125_low_12
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8125_low_12
NF8125_low_12
[»] chr6 (6 HSPs)
chr6 (24-147)||(6174375-6174501)
chr6 (78-148)||(13850747-13850819)
chr6 (149-223)||(5095946-5096020)
chr6 (78-148)||(595739-595811)
chr6 (177-218)||(2689774-2689815)
chr6 (170-215)||(9568825-9568870)
[»] chr1 (24 HSPs)
chr1 (24-149)||(37188147-37188275)
chr1 (38-145)||(38741263-38741373)
chr1 (38-145)||(50158868-50158978)
chr1 (78-145)||(32942285-32942354)
chr1 (78-145)||(33403754-33403823)
chr1 (149-223)||(52561685-52561759)
chr1 (78-145)||(2123582-2123651)
chr1 (177-223)||(7762533-7762579)
chr1 (177-219)||(34827204-34827246)
chr1 (78-147)||(11943666-11943737)
chr1 (177-221)||(29128923-29128967)
chr1 (177-223)||(8628170-8628216)
chr1 (177-222)||(11331301-11331346)
chr1 (177-222)||(11489322-11489367)
chr1 (174-223)||(27520303-27520352)
chr1 (179-222)||(16142077-16142120)
chr1 (180-223)||(32404622-32404665)
chr1 (177-223)||(8203230-8203276)
chr1 (177-223)||(9599490-9599536)
chr1 (181-223)||(26299229-26299271)
chr1 (177-219)||(52832185-52832227)
chr1 (107-148)||(5458620-5458661)
chr1 (190-223)||(36623980-36624013)
chr1 (179-223)||(3818952-3818996)
[»] chr7 (23 HSPs)
chr7 (24-148)||(46457680-46457807)
chr7 (24-148)||(23041596-23041725)
chr7 (24-148)||(28998256-28998383)
chr7 (27-144)||(43998120-43998240)
chr7 (27-94)||(34637645-34637713)
chr7 (92-148)||(34643968-34644024)
chr7 (78-154)||(36616859-36616937)
chr7 (38-145)||(46912927-46913037)
chr7 (78-144)||(33081870-33081938)
chr7 (80-147)||(4519742-4519811)
chr7 (28-145)||(46357785-46357905)
chr7 (177-223)||(28628029-28628075)
chr7 (181-223)||(40980024-40980066)
chr7 (177-222)||(32920264-32920309)
chr7 (24-136)||(31670554-31670669)
chr7 (28-148)||(42896849-42896972)
chr7 (184-223)||(14057625-14057664)
chr7 (184-223)||(14367653-14367692)
chr7 (189-223)||(18795839-18795873)
chr7 (177-223)||(36136904-36136950)
chr7 (177-223)||(38135309-38135355)
chr7 (177-222)||(21517477-21517522)
chr7 (177-221)||(36239894-36239938)
[»] chr4 (12 HSPs)
chr4 (24-148)||(15544998-15545125)
chr4 (24-148)||(4940006-4940133)
chr4 (26-145)||(2917620-2917742)
chr4 (78-148)||(47286604-47286676)
chr4 (169-223)||(51421862-51421916)
chr4 (177-223)||(55809086-55809132)
chr4 (177-222)||(45204936-45204981)
chr4 (177-223)||(17666139-17666185)
chr4 (189-223)||(28550551-28550585)
chr4 (177-223)||(35690411-35690457)
chr4 (177-223)||(47612533-47612579)
chr4 (182-223)||(31043217-31043258)
[»] chr3 (18 HSPs)
chr3 (24-148)||(22418789-22418916)
chr3 (24-145)||(7147179-7147303)
chr3 (154-216)||(26490432-26490494)
chr3 (31-148)||(49430479-49430599)
chr3 (31-148)||(43055289-43055409)
chr3 (78-148)||(27237343-27237415)
chr3 (38-145)||(50386115-50386225)
chr3 (38-145)||(497692-497802)
chr3 (24-142)||(3541699-3541819)
chr3 (177-223)||(39600777-39600823)
chr3 (182-223)||(49042081-49042122)
chr3 (187-223)||(15296057-15296093)
chr3 (161-225)||(54365069-54365133)
chr3 (177-223)||(19676177-19676223)
chr3 (177-223)||(40116564-40116610)
chr3 (181-223)||(45289187-45289229)
chr3 (177-223)||(46431775-46431821)
chr3 (45-96)||(44126429-44126481)
[»] chr8 (12 HSPs)
chr8 (24-148)||(14442998-14443125)
chr8 (24-148)||(11920628-11920755)
chr8 (24-147)||(35702081-35702207)
chr8 (24-66)||(33619469-33619511)
chr8 (78-148)||(7351393-7351465)
chr8 (80-145)||(29246835-29246902)
chr8 (177-223)||(13589619-13589665)
chr8 (177-223)||(39946997-39947043)
chr8 (161-223)||(45512591-45512653)
chr8 (92-145)||(16428095-16428148)
chr8 (190-223)||(45041411-45041444)
chr8 (169-209)||(35914711-35914751)
[»] chr5 (16 HSPs)
chr5 (26-145)||(34225942-34226064)
chr5 (78-148)||(13475554-13475626)
chr5 (38-145)||(25981415-25981525)
chr5 (177-222)||(28022-28067)
chr5 (80-148)||(33798724-33798794)
chr5 (90-145)||(39421299-39421354)
chr5 (78-141)||(3059289-3059354)
chr5 (177-222)||(6889133-6889178)
chr5 (169-221)||(29922416-29922468)
chr5 (80-144)||(26326979-26327045)
chr5 (78-145)||(971737-971806)
chr5 (181-223)||(2090557-2090599)
chr5 (177-222)||(15168911-15168956)
chr5 (177-213)||(6859521-6859557)
chr5 (76-129)||(11773307-11773362)
chr5 (191-223)||(14911326-14911358)
[»] chr2 (7 HSPs)
chr2 (28-145)||(41911744-41911864)
chr2 (38-150)||(917986-918101)
chr2 (179-218)||(45543173-45543212)
chr2 (177-222)||(35755346-35755391)
chr2 (181-223)||(13149476-13149518)
chr2 (177-218)||(6237854-6237895)
chr2 (177-225)||(38435092-38435140)
[»] scaffold1259 (1 HSPs)
scaffold1259 (177-223)||(1615-1661)
[»] scaffold0279 (1 HSPs)
scaffold0279 (178-223)||(17680-17725)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 6174501 - 6174375
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttatta-agctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6174501 atggtaaaatgctctcacccaaaccactttgctatagtttttaagttgttatagctttactttgttaatatatatagttgctttgcaaattttgccacac 6174402  T
Q  121 caatatcaactgtctggatccgcccct 147  Q
    |||||||||||||||||||||||||||    
T  6174401 caatatcaactgtctggatccgcccct 6174375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 13850747 - 13850819
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||  |||||||| |||| | ||||||||||||||||||||| ||||||||||||| ||||    
T  13850747 tttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgctcctg 13850819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 5095946 - 5096020
Alignment:
Q  149 gttagattagacgaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| ||| |||| || ||||||  |||||||||||||||||||||| |||| |||||||||| ||||||||    
T  5095946 gttagatcagaagaggtagaggaagacctagaaaaactagaagagaaactcttaggaaagatttagtggttaatg 5096020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 595739 - 595811
Alignment:
Q  78 tttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||||||  |||  |||| |||||||||||||| |||||||| ||||| ||||| ||||||    
T  595739 tttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtctagatccacccctg 595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 2689774 - 2689815
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggt 218  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  2689774 tagaaaaactataagagaaaccattaaaaaagatttagaggt 2689815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 9568825 - 9568870
Alignment:
Q  170 gaagatatagaaaaactagaagagaaactattagaaaagatttaga 215  Q
    |||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  9568825 gaagatctagaacaactataagagaaactattaggaaagatttaga 9568870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 37188147 - 37188275
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  37188147 atggtaaaatgctctcacccaaaccactttgctatagtttttaagttgttaaagctttactttgttaatatatatagttgctttgcaaattttgccacac 37188246  T
Q  121 caatatcaactgtctggatccgcccctgg 149  Q
    ||||||||| |||||||||||||||||||    
T  37188247 caatatcaattgtctggatccgcccctgg 37188275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 38741263 - 38741373
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | ||| || | ||||||||||||||||  |||||||||||| || |||||||||||||||||||| ||||    
T  38741263 tcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtc 38741362  T
Q  135 tggatccgccc 145  Q
    | |||||||||    
T  38741363 tagatccgccc 38741373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 50158868 - 50158978
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | ||| || | |||||||||||||||||||  ||||||||| || |||||||||||||||||||| ||||    
T  50158868 tcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatggttgctttgaaagttttgccacaccaatatcaaatgtc 50158967  T
Q  135 tggatccgccc 145  Q
    | |||||||||    
T  50158968 tagatccgccc 50158978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 32942285 - 32942354
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    |||||||||||||||  |||||||| |||| | ||||||||||||||||||||| |||||||||||||||    
T  32942285 tttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgccc 32942354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 33403754 - 33403823
Alignment:
Q  78 tttactttgttaatat--atagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    ||||||||||||||||  |||||||||||| || |||||||||||||||||||| ||||| |||||||||    
T  33403754 tttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgccc 33403823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 52561759 - 52561685
Alignment:
Q  149 gttagattagacgaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| |||| || ||||||  ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  52561759 gttagattagaagaggtagaggaagacttagaaaaactataagagaaactgttaggaaagatttagaggttaatg 52561685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 2123651 - 2123582
Alignment:
Q  78 tttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    |||||||||||||||||||  ||||||||| || ||||| |||||||||||||| ||||| |||||||||    
T  2123651 tttactttgttaatatatatagttgctttgaaagttttgtcacaccaatatcaaatgtctagatccgccc 2123582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 7762579 - 7762533
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  7762579 tagaaaaactataagagaaactattagaaaagatttagatgttaatg 7762533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 34827246 - 34827204
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggtt 219  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  34827246 tagaaaaactataagagaaactattagaaaagatttagaggtt 34827204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 11943737 - 11943666
Alignment:
Q  78 tttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccct 147  Q
    |||||||||||||||||||  |||  |||| |||||||||||||| |||||||| ||||| |||||||||||    
T  11943737 tttactttgttaatatatatagtttgtttgaaaattttgccacactaatatcaaatgtctagatccgcccct 11943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29128923 - 29128967
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaa 221  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  29128923 tagaaaaactataagagaaactattaggaaagatttagaggttaa 29128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 8628170 - 8628216
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| || |||||||||||| |||||||||||||||||||    
T  8628170 tagaaaaactataacagaaactattaggaaagatttagaggttaatg 8628216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 11331346 - 11331301
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    |||||||| || ||||||||||||| ||||||||||||||||||||    
T  11331346 tagaaaaagtataagagaaactatttgaaaagatttagaggttaat 11331301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 11489367 - 11489322
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    |||||||| || ||||||||||||| ||||||||||||||||||||    
T  11489367 tagaaaaagtataagagaaactatttgaaaagatttagaggttaat 11489322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 27520352 - 27520303
Alignment:
Q  174 atatagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||| |||||||| ||||||||||||||||||| |||||||| ||||||    
T  27520352 atataaaaaaactataagagaaactattagaaaaaatttagagattaatg 27520303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 16142120 - 16142077
Alignment:
Q  179 gaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||    
T  16142120 gaaaaactataagagaaaccattagaaaagatttagagtttaat 16142077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 32404665 - 32404622
Alignment:
Q  180 aaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||    
T  32404665 aaaaactataagagaaactattaggaaagatttagagattaatg 32404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 8203276 - 8203230
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| |||||||||||||| ||||||| ||||| ||||||    
T  8203276 tagaaaaactataagagaaactattaaaaaagatctagagattaatg 8203230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 9599536 - 9599490
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  9599536 tagaaaaactacaagagaaactattaggaaatatttagagtttaatg 9599490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 26299229 - 26299271
Alignment:
Q  181 aaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| ||||||||||||||  |||||||||||||||||||    
T  26299229 aaaactataagagaaactattatgaaagatttagaggttaatg 26299271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 52832185 - 52832227
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggtt 219  Q
    ||||||||| | |||||||| ||||||||||||||||||||||    
T  52832185 tagaaaaaccaaaagagaaagtattagaaaagatttagaggtt 52832227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 5458661 - 5458620
Alignment:
Q  107 aaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    ||||||||||||||||||||||| |||||  |||||||||||    
T  5458661 aaattttgccacaccaatatcaaatgtctacatccgcccctg 5458620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 36624013 - 36623980
Alignment:
Q  190 agagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||||||||||||||||||||||| |||||    
T  36624013 agagaaactattagaaaagatttagaggctaatg 36623980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 3818996 - 3818952
Alignment:
Q  179 gaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||||    
T  3818996 gaaaaactataagagaaactattaagaaagatttagagattaatg 3818952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 46457807 - 46457680
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||  ||| ||||||||||||||||||||    
T  46457807 atggtaaaatgctctcacccaaaccactttgctatagtttttaagttgttaaagctttactttgttaatatatatagttactttgcaaattttgccacac 46457708  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    ||||||||||||||||||||||||||||    
T  46457707 caatatcaactgtctggatccgcccctg 46457680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 23041725 - 23041596
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata----gttgctttgcaaattttgccac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    |||||||| |||||||||||||    
T  23041725 atggtaaaatgctctcacccaaaccactttgctatagtttttatgttgttaaagctttactttgttaatatatatatagttgcttttcaaattttgccac 23041626  T
Q  119 accaatatcaactgtctggatccgcccctg 148  Q
    ||||||||||||||||||||||||| ||||    
T  23041625 accaatatcaactgtctggatccgctcctg 23041596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 28998256 - 28998383
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||  |||||||||||||||||||||||| ||    
T  28998256 atggtaaaatgctctcacccaaaccactttgctatagtttttaagttgttaaagctttactttgttaatatatatagttgctttgcaaattttgccatac 28998355  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    ||||||||| ||||||||||| ||||||    
T  28998356 caatatcaattgtctggatccacccctg 28998383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 43998240 - 43998120
Alignment:
Q  27 gtaaaatgctctcacccaaaccactttgctatagtttttacgttattaagctt-tactttgttaatatata--gttgctttgcaaattttgccacaccaa 123  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| ||||  || |||||||||||||||||  ||| |||||||||||||| ||||||||    
T  43998240 gtaaaatgctctcacccaaaccactttgttatagtttttaagttgttaaagttgtactttgttaatatatatagttactttgcaaattttgtcacaccaa 43998141  T
Q  124 tatcaactgtctggatccgcc 144  Q
    |||||||| ||||||||||||    
T  43998140 tatcaactctctggatccgcc 43998120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 34637645 - 34637713
Alignment:
Q  27 gtaaaatgctctcacccaaaccactttgctatagtttttacgttatt-aagctttactttgttaatata 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||    
T  34637645 gtaaaatgctctcacccaaaccactttgctatagtttttaagttgttaaagctttactttgttaatata 34637713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 34643968 - 34644024
Alignment:
Q  92 atatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  34643968 atatagttgctttgcaaattttgccacaccaatattaactgtctggatccgtccctg 34644024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 36616937 - 36616859
Alignment:
Q  78 tttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctggttaga 154  Q
    |||||||||||||||||||  |||  |||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  36616937 tttactttgttaatatatatagtttgtttgaaaattttaccacaccaatatcaaatgtctagatccgcccctggttaga 36616859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 46913037 - 46912927
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | ||| || | |||||||||||||||||||  ||||||||| || |||||||||||||||||||| ||||    
T  46913037 tcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtc 46912938  T
Q  135 tggatccgccc 145  Q
    | |||||||||    
T  46912937 tagatccgccc 46912927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 33081870 - 33081938
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcc 144  Q
    |||||||||||||||  |||||||| |||| | ||||||||||||||||||||| ||||||||||||||    
T  33081870 tttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcc 33081938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 4519742 - 4519811
Alignment:
Q  80 tactttgttaatat--atagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccct 147  Q
    ||||||||||||||  ||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||    
T  4519742 tactttgttaatatatatagttgctttgcaagttttgtcacaccaatatcaaatgtctagatccacccct 4519811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 46357905 - 46357785
Alignment:
Q  28 taaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaat 124  Q
    ||||||||||||| |||||||| ||||||||| | ||||   | | || | | |||||||||||||||||  ||| ||||| || |||||||||||||||    
T  46357905 taaaatgctctcatccaaaccattttgctatactgtttaaagtgtcaatggtctactttgttaatatatatagtttctttgaaagttttgccacaccaat 46357806  T
Q  125 atcaactgtctggatccgccc 145  Q
    ||||| ||||| |||||||||    
T  46357805 atcaaatgtctagatccgccc 46357785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 28628075 - 28628029
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  28628075 tagaaaaactataagagaaactattaggaaagatttagagattaatg 28628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 40980066 - 40980024
Alignment:
Q  181 aaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  40980066 aaaactataagagaaactattagaaaagatttagaggtcaatg 40980024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 32920264 - 32920309
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||    
T  32920264 tagaaaaactatgagagaaactattaaaaaagatttagaggttaat 32920309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 31670554 - 31670669
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaagcttt-actttgttaatat--atagttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||| |||||||| |||| | |||| |||| | | | ||  ||| |||||||||||||  ||||||| |||| |||||||  |||||    
T  31670554 atggtaaaatgctctcatccaaaccattttgttgtagtgtttaaggtgtcaatattttactttgttaatatatatagttgttttggaaattttatcacac 31670653  T
Q  121 caatatcaactgtctg 136  Q
    ||||||||| ||||||    
T  31670654 caatatcaaatgtctg 31670669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 42896972 - 42896849
Alignment:
Q  28 taaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaat 124  Q
    |||||||||||||| ||||||| ||||||||| | ||||   | |||  | | |||||||||||||||||  |||  |||  || |||||||||||||||    
T  42896972 taaaatgctctcactcaaaccattttgctatactatttaaagtgttagtgatctactttgttaatatatatagtttttttaaaagttttgccacaccaat 42896873  T
Q  125 atcaactgtctggatccgcccctg 148  Q
    ||||| ||||| ||||||||||||    
T  42896872 atcaaatgtctagatccgcccctg 42896849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 14057625 - 14057664
Alignment:
Q  184 actagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  14057625 actataagagaaactattaggaaagatttagaggttaatg 14057664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 14367653 - 14367692
Alignment:
Q  184 actagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  14367653 actataagagaaactattaggaaagatttagaggttaatg 14367692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 18795839 - 18795873
Alignment:
Q  189 aagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||||| |||||||||||||||||||||    
T  18795839 aagagaaactattcgaaaagatttagaggttaatg 18795873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 36136904 - 36136950
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||| | ||||||||||| |||||||    
T  36136904 tagaaaaactataagagaaactatttggaaagatttagatgttaatg 36136950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 38135355 - 38135309
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||| || |||||||||||||| ||||||||||||| ||||||    
T  38135355 tagaaaaagtataagagaaactattaaaaaagatttagagattaatg 38135309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 21517522 - 21517477
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||||| |||||||||||||| |||| |||||||| |||||    
T  21517522 tagaaaaactataagagaaactattaaaaaatatttagagattaat 21517477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 36239938 - 36239894
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaa 221  Q
    ||||||||||| ||||||||||||||| ||| |||||||| ||||    
T  36239938 tagaaaaactataagagaaactattaggaaaaatttagagattaa 36239894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 15544998 - 15545125
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  15544998 atggtaaaatgctctcatccaaaccactttgctatagtttttaagtttttaaagctttactttgttaatatatatagttgctttgcaaattttgccacac 15545097  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    ||||||||||||||||||||||||||||    
T  15545098 caatatcaactgtctggatccgcccctg 15545125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 4940006 - 4940133
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    |||||| |||||||||||||||||||||||||| |||||| || ||| | || |||||||||||||||||||||  ||| ||||||||||||||||||||    
T  4940006 atggtataatgctctcacccaaaccactttgctgtagtttataagttgtcaaagctttactttgttaatatatatagttcctttgcaaattttgccacac 4940105  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    ||||||||||| ||| ||||||||||||    
T  4940106 caatatcaactctctagatccgcccctg 4940133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 2917742 - 2917620
Alignment:
Q  26 ggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacacca 122  Q
    ||||||||||  |||||||||||||||  ||||||  |||| | ||| || | |||||||||||||||||||  ||||||||| || |||||||||||||    
T  2917742 ggtaaaatgcagtcacccaaaccacttatctatagcatttaagatatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacacca 2917643  T
Q  123 atatcaactgtctggatccgccc 145  Q
    ||||||| ||||| |||||||||    
T  2917642 atatcaaatgtctagatccgccc 2917620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 47286676 - 47286604
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||  |||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||    
T  47286676 tttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcccctg 47286604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 51421862 - 51421916
Alignment:
Q  169 ggaagatatagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  51421862 ggaagatttagaaaaactataagagaaactattaggaaagatttagaggttaatg 51421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 55809132 - 55809086
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  55809132 tagaaaaactataagagaaactgttaggaaagatttagaggttaatg 55809086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 45204981 - 45204936
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||||    
T  45204981 tagaaaaactataagagaaactattaggaaagatttagagtttaat 45204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 17666185 - 17666139
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||| || ||||||||||||||||||||||||| || ||||||    
T  17666185 tagaaaaaatataagagaaactattagaaaagatttatagattaatg 17666139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 28550585 - 28550551
Alignment:
Q  189 aagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  28550585 aagagaaactattaggaaagatttagaggttaatg 28550551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 35690411 - 35690457
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||  ||| |||||||||||||||    
T  35690411 tagaaaaactataagagaaactattacgaaaaatttagaggttaatg 35690457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 47612533 - 47612579
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||||||||||||||||||||||| |||| || ||| ||||||    
T  47612533 tagaaaaactagaagagaaactattagataagacttggagattaatg 47612579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 31043217 - 31043258
Alignment:
Q  182 aaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  31043217 aaactaaaagagaaactattaggaaagatttagagattaatg 31043258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 22418789 - 22418916
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  22418789 atggtaaaatgctctcacccaaaccactttgctatagtttttaagttgttaaagctttactttgttaatatatatagttgctttgcaaattttgccacac 22418888  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    ||||||||| ||||||||||||||||||    
T  22418889 caatatcaattgtctggatccgcccctg 22418916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 7147303 - 7147179
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||  ||| ||||||||||||||||||||    
T  7147303 atggtaaaatgctttcacccaaaccactttgctatagtttttaagttgttaaagctttattttgttaatatatatagtttctttgcaaattttgccacac 7147204  T
Q  121 caatatcaactgtctggatccgccc 145  Q
    ||||||||||||||| |||||||||    
T  7147203 caatatcaactgtctagatccgccc 7147179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 26490432 - 26490494
Alignment:
Q  154 attagacgaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagag 216  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26490432 attagatgaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagag 26490494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 49430599 - 49430479
Alignment:
Q  31 aatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaatatc 127  Q
    |||||||||||||||||||||||| | |||||| || ||| | || |||||||||||||||||||||  ||| |||| ||||||||| ||||||||||||    
T  49430599 aatgctctcacccaaaccactttgatgtagtttataagttgtcaaagctttactttgttaatatatatagtttctttacaaattttgtcacaccaatatc 49430500  T
Q  128 aactgtctggatccgcccctg 148  Q
    |||| ||| ||||||||||||    
T  49430499 aactctctagatccgcccctg 49430479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 43055409 - 43055289
Alignment:
Q  31 aatgctctcacccaaaccactttgctatagtttttacgttat-taagctttactttgtta--atatatagttgctttgcaaattttgccacaccaatatc 127  Q
    ||||||||||||||||| |||||||| |||||| || ||| |  ||| |||| ||| |||  |||||||||| |||||||||||||||||||||||||||    
T  43055409 aatgctctcacccaaacaactttgctgtagtttataagttgtcaaagatttaatttattaatatatatagtttctttgcaaattttgccacaccaatatc 43055310  T
Q  128 aactgtctggatccgcccctg 148  Q
    |||| ||| ||||||||||||    
T  43055309 aactctctagatccgcccctg 43055289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 27237415 - 27237343
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||  |||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||    
T  27237415 tttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcccctg 27237343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 50386115 - 50386225
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | ||| || | ||||||||||||||||  |||||||||||| || |||||||||||||||||||| ||||    
T  50386115 tcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtc 50386214  T
Q  135 tggatccgccc 145  Q
    | |||||||||    
T  50386215 tagatccgccc 50386225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 497802 - 497692
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | |||||| | |||||||||||||||||||  |||| |||| || |||||||||||||||||||  ||||    
T  497802 tcacccaaaccacttatctatagcatttaaggtattaatgttttactttgttaatatatatagttgatttgaaagttttgccacaccaatatcatatgtc 497703  T
Q  135 tggatccgccc 145  Q
    | |||||||||    
T  497702 tagatccgccc 497692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 3541819 - 3541699
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    |||||||||||||||||||||||||| ||| ||| | | |||| ||| | || |||| ||||| ||||||||||  ||| ||||| |||||||| |||||    
T  3541819 atggtaaaatgctctcacccaaaccatttt-ctagactatttaagttgtcaatgcttcactttattaatatatatagttactttgaaaattttgtcacac 3541721  T
Q  121 caatatcaactgtctggatccg 142  Q
    ||||||||| |||||| |||||    
T  3541720 caatatcaaatgtctgcatccg 3541699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 39600823 - 39600777
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  39600823 tagaaaaactataagagaaactattaagaaagatttagaggttaatg 39600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 49042081 - 49042122
Alignment:
Q  182 aaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  49042081 aaactataagagaaactattaggaaagatttagaggttaatg 49042122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 15296057 - 15296093
Alignment:
Q  187 agaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||||||||| |||||||||||||||||||    
T  15296057 agaagagaaactattaggaaagatttagaggttaatg 15296093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 54365133 - 54365069
Alignment:
Q  161 gaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagaggttaatgtg 225  Q
    ||||||| ||||||  ||||||||||| ||||||||||||||| ||||| || ||| ||||||||    
T  54365133 gaggcagaggaagacctagaaaaactataagagaaactattaggaaagacttggagattaatgtg 54365069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 19676223 - 19676177
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||  ||||||||||||||| ||| |||||||||||||||    
T  19676223 tagaaaaactgtaagagaaactattaggaaaaatttagaggttaatg 19676177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 40116610 - 40116564
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||| | |||||||||| ||||||    
T  40116610 tagaaaaactataagagaaactattaggatagatttagagattaatg 40116564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 45289229 - 45289187
Alignment:
Q  181 aaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||    
T  45289229 aaaactataagagaaactattaggaaagatttagagattaatg 45289187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 46431821 - 46431775
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| |||||||||||||| ||||||| ||||| ||||||    
T  46431821 tagaaaaactataagagaaactattaaaaaagatctagagattaatg 46431775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 44126481 - 44126429
Alignment:
Q  45 aaccactttgctatagtttttacgttattaa-gctttactttgttaatatata 96  Q
    ||||||||| |||||||||| | ||| |||| |||||||||||||||||||||    
T  44126481 aaccactttactatagttttgaagttgttaaagctttactttgttaatatata 44126429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 14442998 - 14443125
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||  ||| ||||||||||||||||||||    
T  14442998 atggtaaaatgctctcacccaaaccactttgctatagtttttaagttgttaatgctttactttgttaatatatatagttactttgcaaattttgccacac 14443097  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||||||||| |||||    
T  14443098 caatatcaactgtctggatccgtccctg 14443125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 11920755 - 11920628
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttat-taagctttactttgtta--atatatagttgctttgcaaattttgccacac 120  Q
    |||||| |||||||||||||||||||||||||| |||||| || ||  |  ||||||||| ||||||  |||||||||| |||||||||||| |||||||    
T  11920755 atggtataatgctctcacccaaaccactttgctgtagtttataagtagtcaaagctttacgttgttaatatatatagtttctttgcaaatttcgccacac 11920656  T
Q  121 caatatcaactgtctggatccgcccctg 148  Q
    ||||||||||| ||| ||||||||||||    
T  11920655 caatatcaactctctagatccgcccctg 11920628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 35702081 - 35702207
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacac 120  Q
    ||||||||||| ||||||||||| || |||||| |||| |||| | | | || | |||||||||||||||||||  ||| ||||| || |||||||||||    
T  35702081 atggtaaaatgttctcacccaaatcattttgctgtagtgtttaaggtgtcaatgttttactttgttaatatatatagtttctttgaaagttttgccacac 35702180  T
Q  121 caatatcaactgtctggatccgcccct 147  Q
    ||||||||| ||||||| | |||||||    
T  35702181 caatatcaaatgtctgggttcgcccct 35702207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 33619511 - 33619469
Alignment:
Q  24 atggtaaaatgctctcacccaaaccactttgctatagttttta 66  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33619511 atggtaaaatgctctcacccaaaccactttgctatagttttta 33619469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 7351465 - 7351393
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||  |||||||| |||  | ||||||||||||||||||||| ||||||||||||||||||    
T  7351465 tttactttgttaataaatatagttgatttaaatattttgccacaccaatatcaaatgtctggatccgcccctg 7351393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 29246902 - 29246835
Alignment:
Q  80 tactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    |||||||||||||||||  ||||||||| || |||||||||| ||||||||| ||||| |||||||||    
T  29246902 tactttgttaatatatatagttgctttgaaagttttgccacatcaatatcaaatgtctagatccgccc 29246835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 13589619 - 13589665
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  13589619 tagaaaaactataagagaaactattagaaaagatttaaagattaatg 13589665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 39946997 - 39947043
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||||||  |||||||| |||||||||||||||||||| ||||    
T  39946997 tagaaaaactattagagaaaccattagaaaagatttagaggtcaatg 39947043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 45512653 - 45512591
Alignment:
Q  161 gaggcagtggaagatatagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| ||||||  ||||||||||| ||||||||||||||| ||||| || ||| ||||||    
T  45512653 gaggcagaggaagacctagaaaaactataagagaaactattaggaaagacttggagattaatg 45512591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 16428148 - 16428095
Alignment:
Q  92 atatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    ||||||||  |||| || |||||||||| ||||||||| |||||||||||||||    
T  16428148 atatagtttatttgaaagttttgccacatcaatatcaaatgtctggatccgccc 16428095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 45041444 - 45041411
Alignment:
Q  190 agagaaactattagaaaagatttagaggttaatg 223  Q
    |||||||||||||| |||||||||||||||||||    
T  45041444 agagaaactattaggaaagatttagaggttaatg 45041411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 35914751 - 35914711
Alignment:
Q  169 ggaagatatagaaaaactagaagagaaactattagaaaaga 209  Q
    |||||| |||||||||||| ||||||||||||||| |||||    
T  35914751 ggaagacatagaaaaactataagagaaactattaggaaaga 35914711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 34225942 - 34226064
Alignment:
Q  26 ggtaaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacacca 122  Q
    ||||||||||  |||||||||||||||  |||||   |||| ||||| || | ||||||||||||||||  |||||||||||| || |||||||||||||    
T  34225942 ggtaaaatgcagtcacccaaaccacttatctataacatttaagttatcaaagttttactttgttaatatatatagttgctttgaaagttttgccacacca 34226041  T
Q  123 atatcaactgtctggatccgccc 145  Q
    ||||||| ||||| |||||||||    
T  34226042 atatcaaatgtctagatccgccc 34226064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 13475626 - 13475554
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||||  |||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||    
T  13475626 tttactttgttaataaatatagttgatttgaatattttgccacaccaatatcaaatgtctggatccgcccctg 13475554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 25981415 - 25981525
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | ||| || | ||||||||||||||||  |||||||||||| || |||||||||||||||||| | ||||    
T  25981415 tcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcgaatgtc 25981514  T
Q  135 tggatccgccc 145  Q
    | |||||||||    
T  25981515 tagatccgccc 25981525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 28022 - 28067
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  28022 tagaaaaactataagagaaactattaggaaagatttagaggttaat 28067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 33798724 - 33798794
Alignment:
Q  80 tactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcccctg 148  Q
    |||||||||||||  |||||||| |||| || |||||||| ||||||||||| ||||| ||||||||||||    
T  33798724 tactttgttaatacatatagttgttttgaaagttttgccaaaccaatatcaaatgtctagatccgcccctg 33798794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 39421299 - 39421354
Alignment:
Q  90 atatatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    |||||||||||||||| || |||||||||||||||||||| ||| ||||| |||||    
T  39421299 atatatagttgctttgaaagttttgccacaccaatatcaaatgtatggattcgccc 39421354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 3059289 - 3059354
Alignment:
Q  78 tttactttgttaatatata--gttgctttgcaaattttgccacaccaatatcaactgtctggatcc 141  Q
    |||||||||||||||||||  ||| ||||| || |||||||||||||||||||| ||||| |||||    
T  3059289 tttactttgttaatatatatagttactttgaaagttttgccacaccaatatcaaatgtctagatcc 3059354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 6889133 - 6889178
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||||    
T  6889133 tagaaaaactataagagaaactattaggaaagatttagagattaat 6889178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 29922416 - 29922468
Alignment:
Q  169 ggaagatatagaaaaactagaagagaaactattagaaaagatttagaggttaa 221  Q
    ||||||| ||||||||||| ||||||||||||||  |||||||||||| ||||    
T  29922416 ggaagatctagaaaaactataagagaaactattaagaaagatttagagattaa 29922468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 26326979 - 26327045
Alignment:
Q  80 tactttgttaatata--tagttgctttgcaaattttgccacaccaatatcaactgtctggatccgcc 144  Q
    |||||||||||||||  ||||| ||||| || |||||| ||||||||||||| ||||| ||||||||    
T  26326979 tactttgttaatatacatagtttctttgaaagttttgctacaccaatatcaaatgtctagatccgcc 26327045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 971806 - 971737
Alignment:
Q  78 tttactttgttaata--tatagttgctttgcaaattttgccacaccaatatcaactgtctggatccgccc 145  Q
    |||||||||||||||  |||||||| |||| |  ||||||||||| | |||||| |||||||||||||||    
T  971806 tttactttgttaataaatatagttgatttgaatgttttgccacactattatcaaatgtctggatccgccc 971737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 2090557 - 2090599
Alignment:
Q  181 aaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| |||||||| |||||| |||||||||||||||||||    
T  2090557 aaaactataagagaaaatattaggaaagatttagaggttaatg 2090599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 15168911 - 15168956
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||||| |||||||||| |||| ||| ||||||||||||||    
T  15168911 tagaaaaactataagagaaactgttaggaaaaatttagaggttaat 15168956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 6859521 - 6859557
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagattta 213  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  6859521 tagaaaaactataagagaaactattaggaaagattta 6859557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 11773307 - 11773362
Alignment:
Q  76 gctttactttgttaatatatag--ttgctttgcaaattttgccacaccaatatcaa 129  Q
    |||||||||| ||||||||||   |||||||| ||||||||||||||||| |||||    
T  11773307 gctttactttattaatatatataattgctttgaaaattttgccacaccaaaatcaa 11773362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 14911326 - 14911358
Alignment:
Q  191 gagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| |||||||||||||||||||||||||    
T  14911326 gagaaaccattagaaaagatttagaggttaatg 14911358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 41911744 - 41911864
Alignment:
Q  28 taaaatgctctcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatatata--gttgctttgcaaattttgccacaccaat 124  Q
    ||||||||||||||||||| || ||||||||| | ||||   | |||| | | |||||||||||||||||  ||||||||| || |||||||||||||||    
T  41911744 taaaatgctctcacccaaatcattttgctatactgtttaaagtgttaatggtctactttgttaatatatattgttgctttgaaagttttgccacaccaat 41911843  T
Q  125 atcaactgtctggatccgccc 145  Q
    ||||| ||||| |||||||||    
T  41911844 atcaaatgtctagatccgccc 41911864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 917986 - 918101
Alignment:
Q  38 tcacccaaaccactttgctatagtttttacgttattaa-gctttactttgttaatat--atagttgctttgcaaattttgccacaccaatatcaactgtc 134  Q
    |||||||||||||||  ||||||  |||| | ||| || | ||||||||||||||||  |||||||||||| || |||||||||||||||||||| |||     
T  917986 tcacccaaaccacttatctatagcatttaaggtatcaatgttttactttgttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtt 918085  T
Q  135 tggatccgcccctggt 150  Q
    | ||||||||| ||||    
T  918086 tagatccgcccatggt 918101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 45543212 - 45543173
Alignment:
Q  179 gaaaaactagaagagaaactattagaaaagatttagaggt 218  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45543212 gaaaaactataagagaaactattagaaaagatttagaggt 45543173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 35755391 - 35755346
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaat 222  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||    
T  35755391 tagaaaaactataacagaaactattaggaaagatttagaggttaat 35755346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 13149476 - 13149518
Alignment:
Q  181 aaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| ||||||||||||||  |||||||||||||||||||    
T  13149476 aaaactataagagaaactattatgaaagatttagaggttaatg 13149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 6237895 - 6237854
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggt 218  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  6237895 tagaaaaactagaagataaaccattagaaatgatttagaggt 6237854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 38435092 - 38435140
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatgtg 225  Q
    ||||||||||| ||||||||||||||  |||||| ||||| ||||||||    
T  38435092 tagaaaaactacaagagaaactattaagaaagatctagagattaatgtg 38435140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1259 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1259
Description:

Target: scaffold1259; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 1661 - 1615
Alignment:
Q  177 tagaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1661 tagaaaaactataagagaaactattagaaaagatttaaaggttaatg 1615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 17680 - 17725
Alignment:
Q  178 agaaaaactagaagagaaactattagaaaagatttagaggttaatg 223  Q
    ||||||| || |||||||||||||| ||||||||||||| ||||||    
T  17680 agaaaaaatataagagaaactattaaaaaagatttagagattaatg 17725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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