View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8125_low_15 (Length: 231)
Name: NF8125_low_15
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8125_low_15 |
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| [»] scaffold0209 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4377031 - 4377252
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377031 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaatt |
4377130 |
T |
|
| Q |
101 |
aaatgcatcatgctagtatttgattctaaagtaaatgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactactccagatt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
4377131 |
aaatgcatcatgctagtatttgattctaaattaaatgaaattggcaatgtcgcaactacaatctctacctcaattatgtttgattccactacttcagatt |
4377230 |
T |
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| Q |
201 |
gccatgttaacatatccataca |
222 |
Q |
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||||||||||||||||||||| |
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| T |
4377231 |
tccatgttaacatatccataca |
4377252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 8834583 - 8834797
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaatt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |
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| T |
8834583 |
ctaaaatcaaatgctactgaaagacttcaaagatatgcgctattttaatccatttaacaaaaatgcagccactctcaacctaatatatatcgaccaaatt |
8834682 |
T |
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| Q |
101 |
aaatgcatcatgctagtatttgattctaaagtaaatgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactactccagatt |
200 |
Q |
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||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
8834683 |
aaatgcaacatgctagtatttgattccaaattaaatgaaattggcaatgtcgcaactacaatctctacctaaactatgtttgattccactacttcagatt |
8834782 |
T |
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| Q |
201 |
gccatgttaacatat |
215 |
Q |
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||||||||||||||| |
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| T |
8834783 |
gccatgttaacatat |
8834797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15437546 - 15437620
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
76 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15437546 |
ctaaaatcaaatgctactgaaagatttcaaag-tatgtgctattttaatccatttaacagaaatgcagccactgtc |
15437620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 15528850 - 15528924
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
76 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15528850 |
ctaaaatcaaatgctactgaaagatttcaaag-tatgtgctattttaatccatttaacagaaatgcagccactgtc |
15528924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 29387145 - 29387226
Alignment:
| Q |
135 |
atgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactactccagattgccatgttaacatatc |
216 |
Q |
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||||||| ||||||||| |||||| || |||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
29387145 |
atgaaataggcaatgtctcaactaaaacctctgcctcaactatgtttgattccactacctcagatttccatgttaacatatc |
29387226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7199 - 7078
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaac-ataaatgcagccactgtcaaccaaatatatatcgaccaaat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||| ||||||| |
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| T |
7199 |
ctaaaatcaaatgctactgaaagatttcaaagatatgttctattttaatccatttaacaaaaaatgcagccagtgtctaggtaatatatatcaaccaaat |
7100 |
T |
|
| Q |
100 |
taaatgcatcatgctagtattt |
121 |
Q |
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|
|||||||| ||||||||||||| |
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| T |
7099 |
taaatgcaacatgctagtattt |
7078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 20653 - 20532
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaac-ataaatgcagccactgtcaaccaaatatatatcgaccaaat |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||| ||||||| |
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| T |
20653 |
ctaaaatcaaatgctactgaaagatttcaaagatatgttctattttaatccatttaacaaaaaatgcagccagtgtctaggtaatatatatcaaccaaat |
20554 |
T |
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| Q |
100 |
taaatgcatcatgctagtattt |
121 |
Q |
| |
|
|||||||| ||||||||||||| |
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| T |
20553 |
taaatgcaacatgctagtattt |
20532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 7025 - 6950
Alignment:
| Q |
135 |
atgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactactccagattgccatgttaa |
210 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
7025 |
atgaaattggcaatgtcgcaactacaacctctacctcaactatgtttgattccactacctcaaattgccatgttaa |
6950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 20479 - 20404
Alignment:
| Q |
135 |
atgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactactccagattgccatgttaa |
210 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
20479 |
atgaaattggcaatgtcgcaactacaacctctacctcaactatgtttgattccactacctcaaattgccatgttaa |
20404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30936301 - 30936226
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
30936301 |
ctaaaatcaaatgctactgaaagacttcaaagatatgttctattttaatccatttaatataaatgcagccactgtc |
30936226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22589355 - 22589430
Alignment:
| Q |
1 |
ctaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
76 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
22589355 |
ctaaaatcaaatgctactgaaagacttcaaagatatgttctatttgaatccatttaacataaatgcagccactgtc |
22589430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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