View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8125_low_18 (Length: 211)

Name: NF8125_low_18
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8125_low_18
NF8125_low_18
[»] chr2 (2 HSPs)
chr2 (17-90)||(7963437-7963510)
chr2 (158-196)||(7963331-7963369)
[»] chr5 (1 HSPs)
chr5 (158-191)||(29341080-29341113)
[»] chr4 (1 HSPs)
chr4 (158-191)||(23474196-23474229)
[»] chr1 (1 HSPs)
chr1 (158-191)||(32618885-32618918)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 7963510 - 7963437
Alignment:
Q  17 aatctactggtcaactcactttcccgtgaatcgtatataaacataaatcattttactttacattaattttaact 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7963510 aatctactggtcaactcactttcccgtgaatcgtatataaacataaatcattttactttacattaattttaact 7963437  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 7963369 - 7963331
Alignment:
Q  158 catttattatgccaaatggagaggatctttacccttctt 196  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7963369 catttattatgccaaatggagaggatctttacccttctt 7963331  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 29341080 - 29341113
Alignment:
Q  158 catttattatgccaaatggagaggatctttaccc 191  Q
    |||||||||| |||||||||||||||||||||||    
T  29341080 catttattataccaaatggagaggatctttaccc 29341113  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 23474196 - 23474229
Alignment:
Q  158 catttattatgccaaatggagaggatctttaccc 191  Q
    |||||||||||| |||||||||||||||||||||    
T  23474196 catttattatgctaaatggagaggatctttaccc 23474229  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 32618885 - 32618918
Alignment:
Q  158 catttattatgccaaatggagaggatctttaccc 191  Q
    |||||||||||||||||| |||||||||||||||    
T  32618885 catttattatgccaaatgaagaggatctttaccc 32618918  T

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