View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8125_low_3 (Length: 405)
Name: NF8125_low_3
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8125_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 12139659 - 12139895
Alignment:
| Q |
8 |
gagatgaagagtgcgacaaattcctggaactttagaactcctccataatttagttatgttattcctcttttttgtgtgtccctctctcgatagtgaccaa |
107 |
Q |
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| T |
12139659 |
gagatgaagagtgcgacaaattcctggaaccttagaactcctccataatttagttatgttattcctcttttttgtgt--ccctctctcgatagtgaccaa |
12139756 |
T |
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| Q |
108 |
tgtggcgtgtatga-aagtacattttctacttcgagtttaattttttcagttggagtctgcaataccttacttcatattagtattagtatattagatact |
206 |
Q |
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| T |
12139757 |
tgtggcgtgtatgacaactacattttctacttcaagtttaattttttcagtcggagtctgcaataccttactttatattagtattagtatattagatact |
12139856 |
T |
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| Q |
207 |
tatttattgtttttcatcttgtggagttgattgccatat |
245 |
Q |
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| T |
12139857 |
tatttattgtttttcatcttgtggagttgattgccatat |
12139895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 12139971 - 12140118
Alignment:
| Q |
259 |
attttgagctaaggtatcaatgacaacctggaacatcaatcttatttttctttctatt-gcagttgttgacatcaaataaaataaaaactcccattgttt |
357 |
Q |
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| T |
12139971 |
attttgagctaaggtatcaatgacaacctggaacatcaatcttatttttctttctatttgcagttattgacatcaactaaaataagaactcccattgttt |
12140070 |
T |
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| Q |
358 |
ccagtcccaggaagacatcagctgccttgccacttcctgagtgaccac |
405 |
Q |
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| T |
12140071 |
ccagtcccaggaagacatcagctgccttgtcacttcctgggggaccac |
12140118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 12040554 - 12040440
Alignment:
| Q |
130 |
tttctacttcgagtttaattttttcagttggagtctgcaataccttacttcatattagtattagtatattagatacttatttattgtttttcatcttgtg |
229 |
Q |
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| T |
12040554 |
tttctacttcgtgttttattttttcagttggagtctgcaataccttactttataccagt-ttattagattagatactggtttatcctttttcaacttgtg |
12040456 |
T |
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| Q |
230 |
gagttgattgccatat |
245 |
Q |
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| T |
12040455 |
tagttgattgccatat |
12040440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 12029157 - 12029031
Alignment:
| Q |
259 |
attttgagctaaggtatcaatgacaacctggaacatcaatcttatttttctttctatt-gcagttgttgacatcaaataaaataaaaactcccattgttt |
357 |
Q |
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||||||||||||| |||| ||||||| ||||||| | |||| ||| ||||| | |||| ||| ||||||| ||||| ||||||| ||||||||||||| |
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| T |
12029157 |
attttgagctaagctatctatgacaatctggaacgtaaatcgtatgtttctctgtatttgcaattgttgaaatcaactaaaatacgaactcccattgttc |
12029058 |
T |
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| Q |
358 |
ccagtcccaggaagacatcagctgcct |
384 |
Q |
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||||||| ||||||| |||| |||||| |
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| T |
12029057 |
ccagtcctaggaagaaatcatctgcct |
12029031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 12028760 - 12028702
Alignment:
| Q |
188 |
tattagtatattagatacttatttattgt-ttttcatcttgtggagttgattgccatat |
245 |
Q |
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| T |
12028760 |
tattagtatattagatacttatttattgttttttcgtcttgtggggttgattgccatat |
12028702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 12029342 - 12029283
Alignment:
| Q |
129 |
ttttctacttcgagtttaattttttcagttggagtctgcaataccttacttcatattagt |
188 |
Q |
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|||| ||||| ||||||||| ||| ||||||||||||||||| ||||||| |||||||| |
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| T |
12029342 |
ttttttactttgagtttaatctttgcagttggagtctgcaatgacttactttatattagt |
12029283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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