View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8125_low_4 (Length: 404)

Name: NF8125_low_4
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8125_low_4
NF8125_low_4
[»] chr1 (2 HSPs)
chr1 (15-346)||(315076-315414)
chr1 (261-297)||(20505709-20505745)
[»] chr3 (4 HSPs)
chr3 (15-213)||(51719780-51719978)
chr3 (261-299)||(46904144-46904182)
chr3 (261-297)||(10436430-10436466)
chr3 (99-179)||(44307277-44307357)
[»] chr6 (1 HSPs)
chr6 (261-302)||(32737042-32737083)
[»] chr5 (3 HSPs)
chr5 (261-294)||(22580390-22580423)
chr5 (261-297)||(26368935-26368971)
chr5 (261-289)||(40973273-40973301)
[»] chr2 (2 HSPs)
chr2 (261-297)||(3044404-3044440)
chr2 (261-297)||(7900954-7900990)
[»] chr4 (3 HSPs)
chr4 (261-300)||(33895912-33895951)
chr4 (261-297)||(10418952-10418988)
chr4 (261-297)||(40850878-40850914)
[»] scaffold0020 (1 HSPs)
scaffold0020 (261-297)||(124190-124226)
[»] chr7 (3 HSPs)
chr7 (261-297)||(8124252-8124288)
chr7 (261-289)||(15669766-15669794)
chr7 (261-289)||(29125846-29125874)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 315076 - 315414
Alignment:
Q  15 atgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaagagaactgcaggaccagcaacccaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  315076 atgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaaagaaaatgcaaagagaactgcaggaccagctacccaa 315175  T
Q  115 cccatctgtgcaattgcccatgctagtgatagaactccagaaccaatcacagccgttataatatgtgcactagcagtcaaccatgtcccttcaaattcat 214  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  315176 cccatttgtgctattgcccatgctagtgatagaactccagaaccaatcacagccgttataatatgtgcactagcagttaaccatgtcccttcaaattcat 315275  T
Q  215 caaatcaaaaccatagcaaaattagtacggtaaaaat------annnnnnnnaagaagttaaaatggaatatattactgaaagcctgaaaaaatcag-aa 307  Q
    ||||||||||||||||||||||||||||  |||||||      |        |||||| |||||||||||||||||||||||| ||| ||||||||| |     
T  315276 caaatcaaaaccatagcaaaattagtacaataaaaataaaataaaaaatttgaagaagctaaaatggaatatattactgaaagtctggaaaaatcagcat 315375  T
Q  308 caaaagtatcgaaaaatcagttgaaagagtatcaattta 346  Q
     |||||| || ||||| ||||||||||||||||||||||    
T  315376 aaaaagtgtcaaaaaaccagttgaaagagtatcaattta 315414  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 20505745 - 20505709
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20505745 aagaagttaaaatggaatatattactgaacgcctgaa 20505709  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 51719780 - 51719978
Alignment:
Q  15 atgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaagagaactgcaggaccagcaacccaa 114  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| || || || || || ||||  |||||||| || ||||||| ||||    
T  51719780 atgaacagggtcaggtgaacgataagaatcagcaagaagagtggaagtgaaataagttataaaagagaaagcaagtagaactgctgggccagcaatccaa 51719879  T
Q  115 cccatctgtgcaattgcccatgctagtgatagaactccagaaccaatcacagccgttataatatgtgcactagcagtcaaccatgtcccttcaaattca 213  Q
    ||||| || || ||||||||||| |||||||  ||||| || || ||||| || ||||| ||||||||||| ||||||| |||||| ||||||||||||    
T  51719880 cccatttgagctattgcccatgcaagtgataacactcctgatcctatcactgctgttatgatatgtgcacttgcagtcacccatgtaccttcaaattca 51719978  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 46904144 - 46904182
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaaaa 299  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  46904144 aagaagttaaaatggaatatattaccgaaaacctgaaaa 46904182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 10436430 - 10436466
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||| |||||||||||||||||||||| |||||||    
T  10436430 aagaagctaaaatggaatatattactgaacgcctgaa 10436466  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 44307277 - 44307357
Alignment:
Q  99 aggaccagcaacccaacccatctgtgcaattgcccatgctagtgatagaactccagaaccaatcacagccgttataatatg 179  Q
    ||||||| ||| ||||||||  |||||| | ||||||||||  ||||| || ||||| ||||||||||| ||||| |||||    
T  44307277 aggaccaccaatccaacccaattgtgcagtagcccatgctaaggatagcaccccagacccaatcacagctgttattatatg 44307357  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 32737042 - 32737083
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaaaaaat 302  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  32737042 aagaagttaaaatagaatatattactgaaagcctgaaaaaat 32737083  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 22580390 - 22580423
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcct 294  Q
    ||||||||||||||||||||||||||||||||||    
T  22580390 aagaagttaaaatggaatatattactgaaagcct 22580423  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 26368935 - 26368971
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||| |||||||||||||||||||||| |||||||    
T  26368935 aagaagctaaaatggaatatattactgaacgcctgaa 26368971  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 40973273 - 40973301
Alignment:
Q  261 aagaagttaaaatggaatatattactgaa 289  Q
    |||||||||||||||||||||||||||||    
T  40973273 aagaagttaaaatggaatatattactgaa 40973301  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 3044440 - 3044404
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3044440 aagaagttaaaatggaatatattactgaacgcctgaa 3044404  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 7900954 - 7900990
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  7900954 aagaagctaaaatgaaatatattactgaaagcctgaa 7900990  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 33895951 - 33895912
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaaaaa 300  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  33895951 aagaagataaaatggaatatattactgaaagcctggaaaa 33895912  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 10418952 - 10418988
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||| |||||||||||||||||||||| |||||||    
T  10418952 aagaagctaaaatggaatatattactgaacgcctgaa 10418988  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 40850914 - 40850878
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||| |||||||||||||||||||||| |||||||    
T  40850914 aagaagctaaaatggaatatattactgaacgcctgaa 40850878  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 124190 - 124226
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||| |||||||||||||||||||||| |||||||    
T  124190 aagaagctaaaatggaatatattactgaacgcctgaa 124226  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 8124288 - 8124252
Alignment:
Q  261 aagaagttaaaatggaatatattactgaaagcctgaa 297  Q
    |||||||||||||| |||||||||||||| |||||||    
T  8124288 aagaagttaaaatgaaatatattactgaacgcctgaa 8124252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 15669794 - 15669766
Alignment:
Q  261 aagaagttaaaatggaatatattactgaa 289  Q
    |||||||||||||||||||||||||||||    
T  15669794 aagaagttaaaatggaatatattactgaa 15669766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 29125846 - 29125874
Alignment:
Q  261 aagaagttaaaatggaatatattactgaa 289  Q
    |||||||||||||||||||||||||||||    
T  29125846 aagaagttaaaatggaatatattactgaa 29125874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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