View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8125_low_6 (Length: 381)
Name: NF8125_low_6
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8125_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 18824607 - 18824953
Alignment:
| Q |
16 |
gatataagatcctaccgggatctaaaagactagatattagaaaaggaggaccaaaattataccttgtatatcattggttcaagaacatgaggtaaaagaa |
115 |
Q |
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| T |
18824607 |
gatataagatcctagcaggatctaaaagactagatattagaaaaggaggaccaaaattatatcttgtatatcattgattcaagaacatgaggtaaaagaa |
18824706 |
T |
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| Q |
116 |
gcgctaagatggatggataatggcaaggcagttgggtcaaacgacatacctattaaggtatgaaaaactcttagagatagaaggatatatacaaaatttt |
215 |
Q |
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| T |
18824707 |
gcgctaaga-----ggataatggcaaggcagttgggtcaaacgacatgtttattaaggtatgaaaaactcttagagatagaaggatatatacaaaatttt |
18824801 |
T |
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| Q |
216 |
aggcgagtggagaaaa-aacactttaatcatgatttatatgaactagggagatatacaaattataagaacaaagaatatacacaaaatgttgggcgagtg |
314 |
Q |
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| T |
18824802 |
agacgagtggaaaaaaaaacactttaatcatgatttatatgaactagggagatatacaaattataagaacaaagaatatattcaaaatgttgggcgagtg |
18824901 |
T |
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| Q |
315 |
gagaagaaactcttagatatataacagaatagtacgacgttatttgattcat |
366 |
Q |
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| T |
18824902 |
gaaaagaaactcttagatatatgacagaatagtacgacgtcatttgattcat |
18824953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 8228832 - 8228798
Alignment:
| Q |
162 |
tacctattaaggtatgaaaaactcttagagataga |
196 |
Q |
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| T |
8228832 |
tacctattaaggtatgaaaaactcttagacataga |
8228798 |
T |
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