View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8125_low_7 (Length: 334)

Name: NF8125_low_7
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8125_low_7
NF8125_low_7
[»] chr4 (2 HSPs)
chr4 (1-320)||(42684937-42685256)
chr4 (29-58)||(8689343-8689372)
[»] chr6 (1 HSPs)
chr6 (22-91)||(20848611-20848680)
[»] chr8 (1 HSPs)
chr8 (38-107)||(33503697-33503768)
[»] chr1 (3 HSPs)
chr1 (22-105)||(34688645-34688728)
chr1 (22-105)||(34693173-34693256)
chr1 (37-75)||(8281522-8281560)
[»] chr7 (1 HSPs)
chr7 (34-96)||(24416812-24416874)
[»] chr3 (1 HSPs)
chr3 (3-107)||(10274553-10274657)
[»] chr2 (2 HSPs)
chr2 (38-114)||(37527034-37527111)
chr2 (7-94)||(11292413-11292501)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 42684937 - 42685256
Alignment:
Q  1 tcttgggtgaggttctagggtttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattttctt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42684937 tcttgggtgaggttctagggtttgagaaaaacatttcaaacaccttggatagtgagatctcattagaggaagaatttaagctttctctcttgattttctt 42685036  T
Q  101 aggatcttgttgtggactaagatagacttgagaaaagggtggaaattatggtttatcgttgaagttaattacttgtagcctctttacatcccctgtaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  42685037 aggatcttgttgtggactaagatagacttgagaaaagggtggaaattatggtttatcgttgaagttaattacttgtaacctctttacattccctgtaagg 42685136  T
Q  201 actcactcgtagtggtttggagagctattctccccgcagacgaaggtcagtttaagccaaactgggaaataatagtattatattagtgtttttgttcctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42685137 actcactcgtagtggtttggagagctattctccccgcagacgaaggtcaatttaaggcaaactgggaaataatagtattatattagtgtttttgttcctc 42685236  T
Q  301 tactctcttatctctgttct 320  Q
    ||||||||||||||||||||    
T  42685237 tactctcttatctctgttct 42685256  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 8689343 - 8689372
Alignment:
Q  29 aaacattttaaacaccttggatagtgagat 58  Q
    ||||||||||||||||||||||||||||||    
T  8689343 aaacattttaaacaccttggatagtgagat 8689372  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 20848680 - 20848611
Alignment:
Q  22 ttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctctt 91  Q
    |||||||  ||||| ||||||||||||||| | |||| |||| ||||||||||| |||||||||||||||    
T  20848680 ttgagaatcacattctaaacaccttggataataagatttcattagaggaagaatgtaagctttctctctt 20848611  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 33503697 - 33503768
Alignment:
Q  38 aaacaccttggatagtgagatctcatcagaggaagaat--ttaagctttctctcttgattttcttaggatct 107  Q
    ||||||||||| |||||||||||||| |||||||||||    ||| |||||||||||||| |||||||||||    
T  33503697 aaacaccttgggtagtgagatctcattagaggaagaataaaaaagttttctctcttgattctcttaggatct 33503768  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 34688645 - 34688728
Alignment:
Q  22 ttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt-tcttaggat 105  Q
    |||||||| ||||| |||||||||||| |||||||||| ||| | | |||| || |||||||||||||||||||| |||||||||    
T  34688645 ttgagaaacacattctaaacaccttgggtagtgagatcccattaaatgaag-atctaagctttctctcttgatttctcttaggat 34688728  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 34693173 - 34693256
Alignment:
Q  22 ttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt-tcttaggat 105  Q
    |||||||| ||||| |||||||||||| |||||||||| ||| | | |||| || |||||||||||||||||||| |||||||||    
T  34693173 ttgagaaacacattctaaacaccttgggtagtgagatcccattaaatgaag-atctaagctttctctcttgatttctcttaggat 34693256  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 8281560 - 8281522
Alignment:
Q  37 taaacaccttggatagtgagatctcatcagaggaagaat 75  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  8281560 taaacaccttgggtagtgagatctcattagaggaagaat 8281522  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 24416874 - 24416812
Alignment:
Q  34 ttttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt 96  Q
    ||||||||| |||| ||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  24416874 ttttaaacatcttgtatagtgagatctcattagagaaaggatttaagttttctcttttgattt 24416812  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 10274657 - 10274553
Alignment:
Q  3 ttgggtgaggttctagggtttgagaaaaacattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgattt-tctta 101  Q
    ||||||||| |||| ||||| | |||| ||||| ||  |||||||| |||||||||||||| ||||||||    |||| ||||||||||||||| |||||    
T  10274657 ttgggtgagattcttgggttgg-gaaacacattatattcaccttgggtagtgagatctcattagaggaagggcctaagttttctctcttgatttctctta 10274559  T
Q  102 ggatct 107  Q
    ||||||    
T  10274558 ggatct 10274553  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 37527034 - 37527111
Alignment:
Q  38 aaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttga-ttttcttaggatcttgttgtg 114  Q
    |||||||||||||| ||||||||||| |||||||| || || | ||  |||||||| ||||||||||||||| |||||    
T  37527034 aaacaccttggataatgagatctcattagaggaaggatctatgtttcttctcttgatttttcttaggatcttcttgtg 37527111  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 11292501 - 11292413
Alignment:
Q  7 gtgaggttctagggtttgagaaaa-acattttaaacaccttggatagtgagatctcatcagaggaagaatttaagctttctctcttgat 94  Q
    ||||| || ||||||| ||||||| ||||| |||||| ||||||||||||||  || | |||| |||||| |||| ||||| |||||||    
T  11292501 gtgagattttagggttagagaaaacacattctaaacatcttggatagtgagacttcgttagagaaagaatctaagttttctttcttgat 11292413  T

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