View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8125_low_9 (Length: 246)

Name: NF8125_low_9
Description: NF8125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8125_low_9
NF8125_low_9
[»] chr1 (2 HSPs)
chr1 (10-139)||(22589260-22589389)
chr1 (154-224)||(22589509-22589579)
[»] chr2 (2 HSPs)
chr2 (10-139)||(30936267-30936396)
chr2 (154-224)||(30935486-30935556)
[»] chr8 (3 HSPs)
chr8 (10-136)||(15437451-15437577)
chr8 (10-136)||(15528755-15528881)
chr8 (93-139)||(8834571-8834617)
[»] chr5 (2 HSPs)
chr5 (171-223)||(34548115-34548167)
chr5 (93-139)||(4377019-4377065)
[»] scaffold0209 (2 HSPs)
scaffold0209 (93-139)||(7165-7211)
scaffold0209 (93-139)||(20619-20665)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 22589260 - 22589389
Alignment:
Q  10 gaagcagagatatgaaagacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaa 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22589260 gaagcaaagatatgaaagacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaa 22589359  T
Q  110 atcaaatgctactgaaagacttcaaagata 139  Q
    ||||||||||||||||||||||||||||||    
T  22589360 atcaaatgctactgaaagacttcaaagata 22589389  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 22589509 - 22589579
Alignment:
Q  154 ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22589509 ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttag 22589579  T

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Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 30936396 - 30936267
Alignment:
Q  10 gaagcagagatatgaaagacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaa 109  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30936396 gaagcaaagatatgaaagacaattatctataacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaa 30936297  T
Q  110 atcaaatgctactgaaagacttcaaagata 139  Q
    ||||||||||||||||||||||||||||||    
T  30936296 atcaaatgctactgaaagacttcaaagata 30936267  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 30935556 - 30935486
Alignment:
Q  154 ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttag 224  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30935556 ctaatagtgatagcaaaatttagagaccactccataaaatctaactttagactaaaaaagacattagttag 30935486  T

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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 15437451 - 15437577
Alignment:
Q  10 gaagcagagatatgaaagacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaa 109  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15437451 gaagcaaagatatgaaagacaattacctataacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaa 15437550  T
Q  110 atcaaatgctactgaaagacttcaaag 136  Q
    ||||||||||||||||||| |||||||    
T  15437551 atcaaatgctactgaaagatttcaaag 15437577  T

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Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 15528755 - 15528881
Alignment:
Q  10 gaagcagagatatgaaagacaattacctacaacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaa 109  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15528755 gaagcaaagatatgaaagacaattacctataacaagttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaa 15528854  T
Q  110 atcaaatgctactgaaagacttcaaag 136  Q
    ||||||||||||||||||| |||||||    
T  15528855 atcaaatgctactgaaagatttcaaag 15528881  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 8834571 - 8834617
Alignment:
Q  93 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8834571 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 8834617  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 34548115 - 34548167
Alignment:
Q  171 atttagagaccactccataaaatctaactttagactaaacaagacattagtta 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34548115 atttagagaccactccataaaatctaactttagactaaaaaagacattagtta 34548167  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 4377019 - 4377065
Alignment:
Q  93 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4377019 acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata 4377065  T

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Target: scaffold0209 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 7211 - 7165
Alignment:
Q  93 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  7211 acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata 7165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 20665 - 20619
Alignment:
Q  93 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20665 acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata 20619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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