View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8126_high_1 (Length: 1039)
Name: NF8126_high_1
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 944; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 944; E-Value: 0
Query Start/End: Original strand, 1 - 1022
Target Start/End: Complemental strand, 32803302 - 32802285
Alignment:
| Q |
1 |
aaggtgcagtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803302 |
aaggtgcagtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaa |
32803203 |
T |
|
| Q |
101 |
tgctttgaagagccatgtcatggaggtagctggtggagctgatatagcagaaagtgtagcacaattcgcaagaaggcgtcaacgcggtgtttgtgttctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32803202 |
tgctttgaagagccatgtcatggaggtagccggtggagctgatatagcagaaagtgtagcacaattcgcaaggaggcgtcaacgcggtgtttgtgttctc |
32803103 |
T |
|
| Q |
201 |
agtggaagtggctctgtagctaatgttactcttagacatccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32803102 |
agtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
32803003 |
T |
|
| Q |
301 |
ggacatttctacctggtcctgctccaccaggttcaaccggtcttacagtgtacctggctggaggtcagggccaggttgttggaggttgtgttgttggaac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803002 |
ggacatttctacctggtcctgctccaccaggttcaactggtcttacagtgtacctggctggaggtcagggccaggttgttggaggttgtgttgttggaac |
32802903 |
T |
|
| Q |
401 |
tcttgttgcagttggacctgttatgcttattgccgctacttttactaatgctacttatgagagacttccacttgatgacgatgataatgataataatgaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802902 |
tcttgttgcagttggacctgttatgcttattgccgctacttttactaatgctacttatgagagacttccacttgatgacgatgataatgataataatgaa |
32802803 |
T |
|
| Q |
501 |
gggcctaattctgcaggcggtgtgcaaggtggaggagtgt---ctggtggatcgcctccgccaggaattggtcatcagttgcagggtgggcttccagatc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802802 |
gggcctaattctgcaggcggtgtgcaaggtggaggagcgtcgactggtggatcgcctccaccaggaattggtcatcagttgcagggtgggcttccagatc |
32802703 |
T |
|
| Q |
598 |
cttcttccatgcctttgtataatttgccaccaaatttgttgcctaataatggagggcagatgggacatgaggctcttgcctgggctgctgcgcatggaag |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32802702 |
cttcttccatgcctttgtataatttgccaccaaatttgttgcctaataatggagggcagatgggacatgaggctcttgcctgggctgctgctcatggaag |
32802603 |
T |
|
| Q |
698 |
accaccttattgagttgagttgtgtgaattttcgaataatttagggaggtagagatcaaatatatctaaaaatcaaatttagatctgtgaatttgtcttg |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802602 |
accaccttattgagttgagttgtgtgaattttcgaataatttagggaggtagagatcaaatatatctaaaaatcaaatttagatctgtgaatttgtcttg |
32802503 |
T |
|
| Q |
798 |
tattttgaaggatatatgtattgtgaagaagactctgaggaaacatgcatcttagttcttagtaatattgttgttgtatatggattatgaacttcttttt |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32802502 |
tattttgaaggatatatgtattgtgaagaagactctgaggaagcatgcatcttagttcttagtaata---ttgttgtatatggattatgaacttcttttt |
32802406 |
T |
|
| Q |
898 |
tattctcttttgcttctgtgttttgaataaaaaatatgattgtgggcgtctttttattttatatatctatgaatgaataatttagtagttttatctcctt |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802405 |
tattctcttttgcttctgtgttttgaataaaaaatatgattgtgggcgtctttttattttatatatctatgaatgaataatttagtagttttatctcct- |
32802307 |
T |
|
| Q |
998 |
taattacatatgtgtattggtgagt |
1022 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
32802306 |
---ttacatatgtatattggtgagt |
32802285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 157 - 867
Target Start/End: Complemental strand, 32809702 - 32809007
Alignment:
| Q |
157 |
tagcacaattcgcaagaaggcgtcaacgcggtg-tttgtgttctcagtggaagtggctctgta-----gctaatgttactcttagacatccttcagctcc |
250 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||| | || | |||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
32809702 |
tagcacaattcgcaagaaggcgtcaatgtggtgctttttttttttagtggaagtggctctgtatagcagctaatgttactcttagacaaccttcagctct |
32809603 |
T |
|
| Q |
251 |
tggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccgggacatttctacctggtcctgctccaccaggttcaaccggtcttacagtg |
350 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||||| |||| |||| || | || |||| |||| |
|
|
| T |
32809602 |
tggtgctgttgtagcacttca---caggattgagattttgtccttaactaggaagtttctactcggtcatgct---------tcgattggccttatagtg |
32809515 |
T |
|
| Q |
351 |
tacctggctggaggtcagggccaggttgttggaggttgtgttgttggaactcttgttgcagttggacctgttatgcttattgccgctacttttactaatg |
450 |
Q |
| |
|
||||||| ||||||||| || || || ||| ||||| |||||||||||||||||||| ||| |||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
32809514 |
tacctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaactcttgttgtagtaggactttttatgcttattgcagctacttttactaatg |
32809415 |
T |
|
| Q |
451 |
ctacttatgagagacttccacttgatgacgatgataatgataataatgaagggcctaattctgcaggcggtgtgcaaggtggaggagtgtctggtggatc |
550 |
Q |
| |
|
| |||||| ||||||||| ||||||| || |||||||||||||||||||| |||| ||||| |||| |||||| |||||||| |||||||||||| |
|
|
| T |
32809414 |
caacttatcagagacttcgacttgataacaatgataatgataataatgaaaaacctagttctg-tggcgctgtgcattgtggaggaacgtctggtggatc |
32809316 |
T |
|
| Q |
551 |
gcctccgccaggaattggtcatcagttgcagggtgggcttccagatccttcttccatgcctttgtataatttgccaccaaatttgttgcctaataatgga |
650 |
Q |
| |
|
|||| |||| | ||||| || ||||| ||||||| |||||||| |||||| |||| |||||| |||||||| ||||||||| ||||| | |||||| |
|
|
| T |
32809315 |
gccttcgccggtaattgtctattagttgtagggtggacttccagacccttct---atgcttttgtacaatttgcctccaaatttgatgcct-acaatgga |
32809220 |
T |
|
| Q |
651 |
gggcagatgggacatgaggctcttgcctgggctgctgcgcatggaagaccaccttattgagttgagttgtgtgaattttcgaataatttagggaggtaga |
750 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| ||| ||| || |||| | || ||||||| ||||| || |
|
|
| T |
32809219 |
gggcatatgggacatgaggctcttgcctgcgctactgctcatggaagatcaccttattgagtggagctgtttg-atttgccaacaatttagagaggttga |
32809121 |
T |
|
| Q |
751 |
gatcaaatatatctaaaaatcaaatttagatctgtgaatttgtcttgtattttgaaggatatatgtattgtgaagaagactctgaggaaacatgcatctt |
850 |
Q |
| |
|
|||| ||||||||||||||||||| | ||| ||||||||||||| ||||||| ||||||| |||||| |||||||||| ||||||| ||||| |||| |
|
|
| T |
32809120 |
gatc--atatatctaaaaatcaaatgttgatatgtgaatttgtctggtattttcaaggata-gggtattgggaagaagactgtgaggaagcatgcttctt |
32809024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 16578593 - 16579076
Alignment:
| Q |
1 |
aaggtgcagtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatctttgtaacaagagatagcccaaa |
100 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||||| || || ||||||| |||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
16578593 |
aaggtgcagttgaaattggaaaccgaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccaccaatcttcgtaacaagagacagtccaaa |
16578692 |
T |
|
| Q |
101 |
tgctttgaagagccatgtcatggaggtagctggtggagctgatatagcagaaagtgtagcacaattcgcaagaaggcgtcaacgcggtgtttgtgttctc |
200 |
Q |
| |
|
| | |||| |||||||| ||||| ||| | ||||| ||| |||| ||||||||||| || || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
16578693 |
ttcactgaaaagccatgtgatggaagtatcctccggagcagatgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttcta |
16578792 |
T |
|
| Q |
201 |
agtggaagtggctctgtagctaatgttactcttagacatccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
300 |
Q |
| |
|
|| || ||||| || || || |||||||| |||||||| ||| |||| || || || ||||||||||||||||| |||||||| ||| | || ||||||| |
|
|
| T |
16578793 |
agcggtagtggatcagttgcaaatgttacccttagacaacctgcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcattaaccg |
16578892 |
T |
|
| Q |
301 |
ggacatttctacctggtcctgctccaccaggttcaaccggtcttacagtgtacctggctggaggtcagggccaggttgttggaggttgtgttgttggaac |
400 |
Q |
| |
|
| | |||||||| || |||||||| ||||| ||||||| || ||||||||| | || || || || || || |||||||| || ||||||||||| | |
|
|
| T |
16578893 |
gagcttttctaccaggacctgctcctccaggcgcaaccggactcacagtgtacttagccggtggacaagggcaagttgttggtggaagtgttgttggacc |
16578992 |
T |
|
| Q |
401 |
tcttgttgcagttggacctgttatgcttattgccgctacttttactaatgctacttatgagagacttccacttgatgacgatga |
484 |
Q |
| |
|
| | |||| | ||||||||||||| ||||||| ||||||||| |||||||||| ||||| ||| | |||||||| || ||||| |
|
|
| T |
16578993 |
tttgattgctgctggacctgttatggttattgctgctacttttgctaatgctacctatgaaagattgccacttgaagaagatga |
16579076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 32809747 - 32809703
Alignment:
| Q |
16 |
ttggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32809747 |
ttggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 632
Target Start/End: Original strand, 16579204 - 16579248
Alignment:
| Q |
588 |
cttccagatccttcttccatgcctttgtataatttgccaccaaat |
632 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
16579204 |
cttccagatccatcttctatgcctttgtataatttgccaccaaat |
16579248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 3332434 - 3332386
Alignment:
| Q |
25 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
73 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
3332434 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
3332386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 464
Target Start/End: Complemental strand, 30679129 - 30679022
Alignment:
| Q |
357 |
gctggaggtcagggccaggttgttggaggttgtgttgttggaactcttgttgcagttggacctgttatgcttattgccgctacttttactaatgctactt |
456 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||||| || || | ||||| ||||||||||||| |||| || ||||||||| |||||||||| | |
|
|
| T |
30679129 |
gctggtggtcaggggcaggttgttggtggttctgttgcaggtcctttggttgcttctggacctgttatggttatagctgctacttttgctaatgctacct |
30679030 |
T |
|
| Q |
457 |
atgagaga |
464 |
Q |
| |
|
|||||||| |
|
|
| T |
30679029 |
atgagaga |
30679022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 13212892 - 13212840
Alignment:
| Q |
25 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatc |
77 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||| |||||||||||||||| |
|
|
| T |
13212892 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatc |
13212840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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