View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8126_low_10 (Length: 236)
Name: NF8126_low_10
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 2922389 - 2922181
Alignment:
| Q |
13 |
agaagaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgttgagcttggaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2922389 |
agaagaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgtcgagcttggaaatg |
2922290 |
T |
|
| Q |
113 |
attacctaaatt---catctcatgcaggtcaatttacaggttccgagatgctaattaatttccttacaactcatgttggagcttctgacataccttatat |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2922289 |
attacctaaattcatcatctcatgcaggtcaatttacaggttccgagatgctaattaatttcctcacaactcatgttggagcttctgacataccttatat |
2922190 |
T |
|
| Q |
210 |
atctcctcc |
218 |
Q |
| |
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||||||||| |
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| T |
2922189 |
atctcctcc |
2922181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 37797236 - 37797033
Alignment:
| Q |
15 |
aagaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgttgagcttggaaatgat |
114 |
Q |
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|||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || |
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| T |
37797236 |
aagaaagggggttcttgtgcctgcaaatgttagcaaatgggcagacttaattgtttctaatccttggaggaaggaaaattatgttgagctcggaaaggag |
37797137 |
T |
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| Q |
115 |
tacctaaat---tcatctcatgcaggtcaatttacaggttccgagatgctaattaatttccttacaactcatgttggagcttctgacataccttatatat |
211 |
Q |
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||||||||| |||||| ||||||| |||||||||||||||| | ||| ||| ||||||| ||||||||||||| |||||||||||| ||| |||||| |
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| T |
37797136 |
tacctaaatacctcatcttatgcaggccaatttacaggttccggaaagcttattgatttcctcacaactcatgttgaagcttctgacattcctcatatat |
37797037 |
T |
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| Q |
212 |
ctcc |
215 |
Q |
| |
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|||| |
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| T |
37797036 |
ctcc |
37797033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 2931728 - 2931526
Alignment:
| Q |
16 |
agaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgttgagcttggaaatgat- |
114 |
Q |
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|||||||| |||||| |||||| |||| | ||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| ||||| ||| |
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| T |
2931728 |
agaaatggtgttcttctgcctgaaaatgttagcaaatgggcagacttaatggtttctaatccatggagaaaagaaaattatgttgagctaggaaa-gatg |
2931630 |
T |
|
| Q |
115 |
tacctaaattcatctcatgcaggtcaatttacaggttccgagatgctaattaatttccttacaactcatgttggagcttctgacataccttatatatctc |
214 |
Q |
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||||||||| ||||| |||||| |||| ||||| ||| | || ||| ||| | ||||| | || |||||||||||||||||||||||||||| |||||| |
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| T |
2931629 |
tacctaaatgcatcttatgcagaccaatctacagattctgggaagcttattgaattcctcaaaaatcatgttggagcttctgacataccttatctatctc |
2931530 |
T |
|
| Q |
215 |
ctcc |
218 |
Q |
| |
|
|||| |
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|
| T |
2931529 |
ctcc |
2931526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 3011033 - 3011238
Alignment:
| Q |
16 |
agaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgttgagcttggaaatgatt |
115 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||| | | |
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| T |
3011033 |
agaaatggggttcttctgcctgcaaatgtgagcaaatgggcagacttgattggttctaatccatggagaaatgaaaattatgttgagctaggaaaggcat |
3011132 |
T |
|
| Q |
116 |
acctaa---attcatctcatgcaggtcaatttacaggttccgagatgctaattaatttccttacaactcatgttggagcttctgacataccttatatatc |
212 |
Q |
| |
|
|||||| |||| ||| ||||||| ||| || | ||| | || | ||| | ||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
3011133 |
acctaaatgattcttcttatgcaggccaacatatggattctgggaaatttattgaattcctcaaaactcatgttaaagcttctgacataccttatatatc |
3011232 |
T |
|
| Q |
213 |
tcctcc |
218 |
Q |
| |
|
|||||| |
|
|
| T |
3011233 |
tcctcc |
3011238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 2948379 - 2948284
Alignment:
| Q |
15 |
aagaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgttgagcttggaaa |
110 |
Q |
| |
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|||| |||| |||||| ||||||||||| |||||||||||||| | |||| | |||| |||| |||| |||| |||||||||||||| ||||| |
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| T |
2948379 |
aagagatggagttcttctgcctgcaaatgtgagcaaatgggcacaattgactaattctgatccatggatagatgagaattatgttgagctaggaaa |
2948284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 4915104 - 4915304
Alignment:
| Q |
24 |
ggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttct---aatccttggaggaatgaaaattatgttgagcttggaaatgattaccta |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||||||||| | ||||| ||||| | |||||| |
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| T |
4915104 |
ggttcttgtgcctgcaaatgtgagcaaatgggcaggcttgattgtttcttctaatccatggacttatgaaaattacatcgagctaggaaaggcgtaccta |
4915203 |
T |
|
| Q |
121 |
aattcatctc---atgcaggtcaatttacaggttccgagatgctaattaatttccttacaactcatgttggagcttctgacataccttatatatctcctc |
217 |
Q |
| |
|
||| ||||| ||||||| |||| ||||| || | || ||| ||| |||||| | ||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
4915204 |
aatgcatcttcttatgcaggccaatatacagattatgggaagcttattggtttcctcaaaacccatgttggagcttccgacataccttatatatctcctc |
4915303 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
4915304 |
c |
4915304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 1505345 - 1505458
Alignment:
| Q |
16 |
agaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgttgagcttggaaatgatt |
115 |
Q |
| |
|
||||| || |||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||| || ||||| | | |
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|
| T |
1505345 |
agaaaaggagttcttctgcctgcaaatgtgagcaaatgggctgacttgattgtttctaatccatggagaaatgaaggttatgttgaactaggaaaggcgt |
1505444 |
T |
|
| Q |
116 |
acctaaattcatct |
129 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
1505445 |
acctaaatgcatct |
1505458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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